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| author | Efraim Flashner | 2023-09-24 15:24:17 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2023-09-24 15:24:17 +0300 |
| commit | bc0bc49230c7bfbf2343301345da79a04bff43c9 (patch) | |
| tree | cb4f0c0672f9efaaee7806c3d4e4a09c3b78310c /gn | |
| parent | 10f65dc422f98e2d679754e194ea7c70328b7784 (diff) | |
| download | guix-bioinformatics-bc0bc49230c7bfbf2343301345da79a04bff43c9.tar.gz | |
pggb: Provide version with glibc-hwcaps.
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 18 |
1 files changed, 16 insertions, 2 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index c2a2e09..1fb8844 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -20,6 +20,7 @@ #:use-module (guix build-system waf) #:use-module (gnu packages) #:use-module (gn packages crates-io) + #:use-module (gn packages datastructures) #:use-module (gn packages java) #:use-module (gn packages ocaml) #:use-module (gn packages python) @@ -2602,7 +2603,7 @@ multiple sequence alignment.") fastix multiqc mummer - odgi-hwcaps + odgi pafplot parallel pigz @@ -2616,7 +2617,7 @@ multiple sequence alignment.") vcfbub vcflib vg - wfmash-hwcaps)) + wfmash)) (home-page "https://doi.org/10.1101/2023.04.05.535718") (synopsis "PanGenome Graph Builder") (description "@command{pggb} builds @@ -2646,6 +2647,19 @@ Reference Consortium, HPRC} as a method to build a graph from the @url{https://doi.org/10.1101/2022.07.09.499321, draft human pangenome}.") (license license:expat)))) +(define use-glibc-hwcaps + (package-input-rewriting/spec + ;; Replace some packages with ones built targeting custom packages build + ;; with glibc-hwcaps support. + `(("sdsl-lite" . ,(const sdsl-lite-hwcaps)) + ("odgi" . ,(const odgi-hwcaps)) + ("wfmash" . ,(const wfmash-hwcaps))))) + +(define-public pggb-with-hwcaps + (package + (inherit (use-glibc-hwcaps pggb)) + (name "pggb-with-hwcaps"))) + (define-public ucsc-genome-browser (package (name "ucsc-genome-browser") |