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| author | Efraim Flashner | 2023-03-22 14:49:00 +0200 |
|---|---|---|
| committer | Efraim Flashner | 2023-03-22 14:49:43 +0200 |
| commit | a66e0cbedda4927d9546829e162d08d03bb667da (patch) | |
| tree | bad45d0395aa47b79da06707f2bc67ca9f5c8e8e /gn | |
| parent | add8bb0bdf3797704a30095ef21058b11778bc27 (diff) | |
| download | guix-bioinformatics-a66e0cbedda4927d9546829e162d08d03bb667da.tar.gz | |
bh20-seq-resource: Add version without profile collisions.
* gn/packages/bioinformatics.scm (bh20-seq-resource-for-service): New
variable.
* gn/services/bh20-seq-resource-container.scm
(covid19-pubseq-configuration): Use it by default.
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 12 | ||||
| -rw-r--r-- | gn/services/bh20-seq-resource-container.scm | 2 |
2 files changed, 13 insertions, 1 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index b94f537..0e6caf0 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1852,6 +1852,18 @@ it to upload the genomes of SARS-CoV-2 samples to make them publicly and freely available to other researchers.") (license license:asl2.0)))) +;; This version has no profile collisions. +(define-public bh20-seq-resource-for-service + (package + ;(inherit (fix-profile-collisions-for-bh20 bh20-seq-resource)) + (inherit + ((package-input-rewriting/spec + `(("python-google-api-core" . ,(const python-google-api-core-1)) + ("python-google-auth" . ,(const python-google-auth-1)) + ("python-pyparsing" . ,(const python-pyparsing-2.4.7)))) + bh20-seq-resource)) + (properties `((hidden? . #t))))) + (define-public python-scanpy-git (let ((commit "590d42309f9ed6550d7b887039990edfc1ac7648") ; April 22, 2020 (revision "1")) diff --git a/gn/services/bh20-seq-resource-container.scm b/gn/services/bh20-seq-resource-container.scm index cb77cdb..9eae2fc 100644 --- a/gn/services/bh20-seq-resource-container.scm +++ b/gn/services/bh20-seq-resource-container.scm @@ -14,7 +14,7 @@ make-covid19-pubseq-configuration covid19-pubseq-configuration? (package covid19-pubseq-configuration-package ; package - (default bh20-seq-resource)) + (default bh20-seq-resource-for-service)) (deploy-directory covid19-pubseq-deploy-directory ; string (default "/srv/http")) (port covid19-pubseq-configuration-port ; string |