diff options
| author | pjotrp | 2018-03-20 11:13:56 +0000 |
|---|---|---|
| committer | pjotrp | 2018-03-20 11:13:56 +0000 |
| commit | 84dd8cebae9eefdb7d7f9ca43e53b3ddfc295eb1 (patch) | |
| tree | aaa09ca5cf459f762a1eb53c65dc98c5801ff3cd /gn | |
| parent | 50dbb901666064a9925e6053090ef59419ad1ce5 (diff) | |
| download | guix-bioinformatics-84dd8cebae9eefdb7d7f9ca43e53b3ddfc295eb1.tar.gz | |
Adding GN python packages for testing
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/genenetwork.scm | 5 | ||||
| -rw-r--r-- | gn/packages/python.scm | 21 |
2 files changed, 26 insertions, 0 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index d9696a3..14b7945 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -19,6 +19,7 @@ #:use-module (gnu packages bioinformatics) #:use-module (gnu packages boost) #:use-module (gnu packages compression) + #:use-module (gnu packages check) #:use-module (gnu packages databases) #:use-module (gnu packages cpio) #:use-module (gn packages elixir) @@ -202,6 +203,7 @@ location of a putative QTL.") ("nginx" ,nginx) ("python2-flask" ,python2-flask) ("gunicorn" ,gunicorn) + ("python2-cssselect" ,python2-cssselect) ("python2-elasticsearch" ,python2-elasticsearch) ("python2-htmlgen-gn" ,python2-htmlgen-gn) ("python2-jinja2" ,python2-jinja2) @@ -209,12 +211,14 @@ location of a putative QTL.") ("python2-flask-sqlalchemy" ,python2-flask-sqlalchemy) ("python2-setuptools" ,python2-setuptools) ("python2-scipy" ,python2-scipy) + ("python2-lxml" ,python2-lxml) ("python2-mechanize" ,python2-mechanize) ("python2-mysqlclient" ,python2-mysqlclient) ("python2-numarray" ,python2-numarray) ("python2-numpy" ,python2-numpy) ("python2-pandas" ,python2-pandas) ("python2-parallel" ,python2-parallel) + ("python2-parameterized" ,python2-parameterized) ("python2-passlib" ,python2-passlib) ("python2-piddle-gn" ,python2-piddle-gn) ("python2-redis" ,python2-redis) @@ -225,6 +229,7 @@ location of a putative QTL.") ("python2-scipy" ,python2-scipy) ("python2-simplejson" ,python2-simplejson) ("python2-pyyaml" ,python2-pyyaml) + ("python2-unittest2" ,python2-unittest2) ("python2-xlsxwriter" ,python2-xlsxwriter) ("qtlreaper" ,qtlreaper) ("javascript-twitter-post-fetcher" ,javascript-twitter-post-fetcher) diff --git a/gn/packages/python.scm b/gn/packages/python.scm index 9601b3c..a6a99c6 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -44,6 +44,27 @@ #:use-module (guix build-system trivial) #:use-module (srfi srfi-1)) +(define-public python-pyvcf + (package + (name "python-pyvcf") + (version "0.6.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyvcf" version)) + (sha256 + (base32 + "1ngryr12d3izmhmwplc46xhyj9i7yhrpm90xnsd2578p7m8p5n79")))) + (build-system python-build-system) + (home-page + "https://github.com/jamescasbon/PyVCF") + (synopsis + "Variant Call Format (VCF) parser for Python") + (description + "Variant Call Format (VCF) parser for Python") + (license #f))) + + (define-public python-elasticsearch (package (name "python-elasticsearch") |