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| author | pjotrp | 2017-01-24 09:29:44 +0000 |
|---|---|---|
| committer | pjotrp | 2017-01-24 09:29:44 +0000 |
| commit | 77990bdcb4a85ed044dd5dd9bf49f2515b9ce742 (patch) | |
| tree | c00b5e4542f6138c90fb2995577c430b45cbfdc5 /gn | |
| parent | f8c952c5ae8594fcbd95c680ce3b6bcbfe563a6f (diff) | |
| download | guix-bioinformatics-77990bdcb4a85ed044dd5dd9bf49f2515b9ce742.tar.gz | |
sambamba: remove lz4 and rdmd
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 11 |
1 files changed, 0 insertions, 11 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 701ac1d..e16c28e 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -941,20 +941,12 @@ association studies (GWAS).") `(("ldc" ,ldc) ("lz4" ,lz4) ("coreutils" ,coreutils) ; for env - ;; ("rdmd" ,rdmd) ("zlib" ,zlib) ("perl" ,perl) ; Needed for htslib ("ruby" ,ruby) ; Needed for htslib ("python" ,python-2) ; Needed for htslib ("gcc" ,gcc) ("which" ,which) - ; ("lz4-src" - ; ,(origin - ; (method url-fetch) - ; (uri "https://github.com/Cyan4973/lz4/archive/160661c7a4cbf805f4af74d2e3932a17a66e6ce7.tar.gz") - ; (file-name (string-append "lz4-" (string-take commit 7) ".tar.gz" )) - ; (sha256 - ; (base32 "131nnbsd5dh7c8sdqzc9kawh3mi0qi4qxznv7zhzfszlx4g2fd20")))) ("htslib-src" ,(origin (method url-fetch) @@ -988,9 +980,6 @@ association studies (GWAS).") (and (with-directory-excursion "htslib" (zero? (system* "tar" "xvf" (assoc-ref inputs "htslib-src") "--strip-components=1"))) - ; (with-directory-excursion "lz4" - ; (zero? (system* "tar" "xvf" (assoc-ref inputs "lz4-src") - ; "--strip-components=1"))) (zero? (system* "rm" "-r" "BioD")) (zero? (system* "ln" "--symbolic" "--no-target-directory" (assoc-ref inputs "biod-src") "BioD"))))) |