diff options
| author | Efraim Flashner | 2022-09-04 15:04:33 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2022-09-20 14:20:48 +0300 |
| commit | 66c88ccd07c303af60494b110067ab0e5636931a (patch) | |
| tree | 42eb937b78c3f643e54cfa325ab0a5040b4d3eed /gn | |
| parent | c380c2cdedfa0a20a2b731f081443b963ab3b97f (diff) | |
| download | guix-bioinformatics-66c88ccd07c303af60494b110067ab0e5636931a.tar.gz | |
bnw: Update package
Remove trailing #t from phases
Replace PYTHONPATH with GUIX_PYTHONPATH
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bnw.scm | 26 |
1 files changed, 9 insertions, 17 deletions
diff --git a/gn/packages/bnw.scm b/gn/packages/bnw.scm index b545b84..1e2c86e 100644 --- a/gn/packages/bnw.scm +++ b/gn/packages/bnw.scm @@ -56,8 +56,7 @@ ;"fontawesome-webfont.woff" ; sha256 mismatch ;"jquery.min.js" ; sha256 mismatch ;"lodash.js" ; sha256 mismatch - )) - #t)))) + )))))) (build-system gnu-build-system) (arguments `(#:tests? #f ; no test suite @@ -68,8 +67,7 @@ (lambda _ ;; sourcecodes/matrix.php hardcodes $dir=/tmp/bnw (substitute* "sourcecodes/matrix.php" - (("/tmp/bnw") "/var/lib/genenet/bnw/")) - #t)) + (("/tmp/bnw") "/var/lib/genenet/bnw/")))) (add-after 'patch-source-shebangs 'patch-more-shebangs (lambda* (#:key inputs #:allow-other-keys) (let ((graphviz (assoc-ref inputs "graphviz")) @@ -91,8 +89,7 @@ (("/usr/bin/dot") (string-append graphviz "/bin/dot"))) (substitute* "var_lib_genenet_bnw/build.sh" (("./localscore/libRmath.so") - (string-append rmath "/lib/libRmath.so"))) - #t))) + (string-append rmath "/lib/libRmath.so")))))) (add-after 'patch-source-shebangs 'replace-javascript (lambda* (#:key inputs #:allow-other-keys) (let ((jquery (assoc-ref inputs "jquery")) @@ -140,13 +137,11 @@ ; "sourcecodes/network_layout_inv.php" ; "sourcecodes/network_layout_inv_2.php") ; (("https://www.google.com/jsapi") "https://www.gstatic.com/charts/loader.js")) - ) - #t)) + ))) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) - (copy-recursively "." out)) - #t)) + (copy-recursively "." out)))) (add-after 'install 'install-javascript-libraries (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) @@ -212,8 +207,7 @@ (string-append scripts "canvas-toBlob.js"))) (unless (file-exists? (string-append scripts "FileSaver.min.js")) (symlink (string-append filesaver js-path2 "filesaver/FileSaver.min.js") - (string-append scripts "FileSaver.min.js"))) - #t))) + (string-append scripts "FileSaver.min.js")))))) (add-after 'install 'make-files-executable (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) @@ -222,15 +216,14 @@ (chmod file #o555)) (append (find-files out "\\.(sh|py)$") (find-files - (string-append out "/sourcecodes/run_scripts/") "^run"))) - #t))) + (string-append out "/sourcecodes/run_scripts/") "^run")))))) (add-after 'make-files-executable 'wrap-executables (lambda* (#:key outputs #:allow-other-keys) (for-each (lambda (script) (wrap-program script `("PATH" prefix (,(dirname (which "cp")))) - `("PYTHONPATH" prefix (,(getenv "PYTHONPATH"))))) + `("GUIX_PYTHONPATH" prefix (,(getenv "GUIX_PYTHONPATH"))))) (find-files (string-append (assoc-ref outputs "out") "/sourcecodes/run_scripts") "^run")) (for-each @@ -241,8 +234,7 @@ (find-files (string-append (assoc-ref outputs "out") "/sourcecodes") "\\.sh$") (find-files (string-append (assoc-ref outputs "out") - "/var_lib_genenet_bnw") "\\.sh$"))) - #t)) + "/var_lib_genenet_bnw") "\\.sh$"))))) (replace 'build (lambda* (#:key inputs #:allow-other-keys) (with-directory-excursion "var_lib_genenet_bnw" |