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| author | jgart | 2024-07-31 14:39:01 -0500 |
|---|---|---|
| committer | jgart | 2024-07-31 14:39:51 -0500 |
| commit | 3c7e6101384e78232a62cd471ac8fd83c8fca3f5 (patch) | |
| tree | 15e4233e591140d30b854f6844e22585254bd162 /gn | |
| parent | fc66a23d84935889ccf2c030e860d6ce7ab9bcb7 (diff) | |
| download | guix-bioinformatics-3c7e6101384e78232a62cd471ac8fd83c8fca3f5.tar.gz | |
mouse-longevity-app: extract the pubmed archive in the package
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/genecup.scm | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/gn/packages/genecup.scm b/gn/packages/genecup.scm index 844e10c..d0689e6 100644 --- a/gn/packages/genecup.scm +++ b/gn/packages/genecup.scm @@ -7,7 +7,9 @@ #:use-module (guix git-download) #:use-module (guix build-system python) #:use-module (gnu packages admin) + #:use-module (gnu packages base) #:use-module (gnu packages bioinformatics) + #:use-module (gnu packages compression) #:use-module (gnu packages javascript) #:use-module (gnu packages machine-learning) #:use-module (gnu packages python) @@ -179,6 +181,10 @@ if __name__ == '__main__': (("https.*1.12.9/umd/popper.min.js.*\\\">") "/static/popper.min.js\">")) (substitute* "ratspub.py" (("hostname") (string-append inetutils "/bin/hostname")))))) + (add-after 'unpack 'extract-pubmed-archive + (lambda _ + (invoke "gzip" "-d" "minipubmed.tgz") + (invoke "tar" "xvf" "minipubmed.tar"))) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) @@ -230,6 +236,8 @@ if __name__ == '__main__': (inputs `(("edirect" ,edirect) ("inetutils" ,inetutils) + ("gzip" ,gzip) + ("tar" ,tar) ("python-bcrypt" ,python-bcrypt) ("python-flask-sqlalchemy" ,python-flask-sqlalchemy) ("python-keras" ,python-keras-no-tests) |