diff options
| author | pjotrp | 2017-01-20 13:09:26 +0000 |
|---|---|---|
| committer | pjotrp | 2017-01-20 13:09:26 +0000 |
| commit | 2b219d0f250019c86aa1ff2466d511655bdb4daa (patch) | |
| tree | bce21214a709cc005b292ddc1e7879b428b79cfc /gn | |
| parent | e9a935845768ed2ab84810884a2ad516a1f5933a (diff) | |
| download | guix-bioinformatics-2b219d0f250019c86aa1ff2466d511655bdb4daa.tar.gz | |
Sambamba: switched to guix makefile
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 7 |
1 files changed, 3 insertions, 4 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index d524ea2..c1c1a2c 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -921,7 +921,7 @@ association studies (GWAS).") (license license:gpl3)))) (define-public sambamba - (let ((commit "c6f52cc7f71d2cdb0bafe3bb911042c6e2ef2475")) + (let ((commit "7518a1ff0f07f2013601c05564e1ad1256b479da")) (package (name "sambamba") (version (string-append "0.6.5-" (string-take commit 7))) @@ -934,7 +934,7 @@ association studies (GWAS).") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "0ljpiamx4fabm1ha4swfdghl5slwg530y0vzvd9h170shj6gaj91")))) + "14wpj05hycz9fqrzc2mqx5vl4h42kx1sms9dqpapz46vwc2d0zz3")))) (build-system gnu-build-system) (native-inputs `(("ldc" ,ldc) @@ -975,7 +975,6 @@ association studies (GWAS).") (base32 "1m8hi1n7x0ri4l6s9i0x6jg4z4v94xrfdzp7mbizdipfag0m17g3")))))) (arguments `(#:tests? #f ; no tests available - #:make-flags (list "-f" "Makefile.guix") #:phases (modify-phases %standard-phases (delete 'configure) @@ -997,7 +996,7 @@ association studies (GWAS).") (replace 'build (lambda* (#:key inputs make-flags #:allow-other-keys) - (zero? (system* "make" "sambamba-ldmd2-64" "CC=gcc" "D_COMPILER=ldc2" + (zero? (system* "make" "-f" "Makefile.guix" "sambamba-ldmd2" "CC=gcc" "D_COMPILER=ldc2" (string-append "LDC_LIB_PATH=" (assoc-ref inputs "ldc") "/lib"))))) |