diff options
author | Dennis E. Mungai | 2016-03-12 02:28:47 +0300 |
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committer | Dennis E. Mungai | 2016-03-12 02:28:47 +0300 |
commit | 8fa5616879f7b973a8377e6ac3ca46726b459f22 (patch) | |
tree | d32c0d1e48c7f63a6dc368eba8e24dcd3c22ce60 /gn | |
parent | c27a4c0a6586fcb3532a39b1d7875856e4d1e574 (diff) | |
download | guix-bioinformatics-8fa5616879f7b973a8377e6ac3ca46726b459f22.tar.gz |
WIP
Work in progress. Investigate,
Diffstat (limited to 'gn')
-rw-r--r-- | gn/packages/pocl.scm | 189 |
1 files changed, 154 insertions, 35 deletions
diff --git a/gn/packages/pocl.scm b/gn/packages/pocl.scm index 93534b7..39f16c0 100644 --- a/gn/packages/pocl.scm +++ b/gn/packages/pocl.scm @@ -20,15 +20,21 @@ #:use-module ((guix licenses) #:prefix license:) #:use-module (guix git-download) #:use-module (guix download) + #:use-module (guix utils) #:use-module (guix build-system gnu) #:use-module (guix build-system cmake) #:use-module (guix packages) + #:use-module (gnu packages) + #:use-module (srfi srfi-1) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) #:use-module (gnu packages curl) #:use-module (gnu packages boost) + #:use-module (gnu packages bootstrap) + #:use-module (gnu packages base) #:use-module (gnu packages gawk) #:use-module (gnu packages cmake) + #:use-module (gnu packages gcc) #:use-module (gnu packages glib) #:use-module (gnu packages image) #:use-module (gnu packages video) @@ -42,6 +48,7 @@ #:use-module (gnu packages perl) #:use-module (gnu packages python) #:use-module (gnu packages xorg) + #:use-module (gnu packages xml) #:use-module (gnu packages version-control) #:use-module (gnu packages ruby) #:use-module (gnu packages gnupg) @@ -49,7 +56,7 @@ #:use-module (gnu packages linux)) (define-public pocl -(let ((commit "a6f377a")) +(let ((commit "7aefc52")) (package (name "pocl") (version (string-append "v09rc-" commit )) @@ -61,7 +68,7 @@ (file-name (string-append name "-" commit)) (sha256 (base32 - "0b1y8c2y0xx5sqfpkkvgmp02czgmq5immypgm4hhpmp512hcj38j")))) + "03wbcxkx1w5kx0crangsnah0xq218bhb99vglmn00wcjhhw80qim")))) (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) ("libtool" ,libtool) @@ -70,8 +77,8 @@ (inputs `(("python" ,python-2) ("boost" ,boost) ("dbus" ,dbus) - ("clang" ,clang) - ("clang-runtime" ,clang-runtime) + ("clang" ,clang-3.7.1) + ("clang-runtime" ,clang-runtime-3.7.1) ("enca" ,enca) ("eudev" ,eudev) ("fftw-openmpi" ,fftw-openmpi) @@ -111,37 +118,7 @@ new targets and devices, both for homogeneous CPU and heterogenous GPUs/accelerators.") (home-page "http://portablecl.org/") (license license:gpl2)))) - -(define-public llvm-3.7.1 -(package - (name "llvm-3.7.1") - (version "3.7.1") - (source - (origin - (method url-fetch) - (uri (string-append "http://llvm.org/releases/" - version "/llvm-" version ".src.tar.xz")) - (sha256 - (base32 - "1masakdp9g2dan1yrazg7md5am2vacbkb3nahb3dchpc1knr8xxy")))) - (build-system cmake-build-system) - (native-inputs - `(("python" ,python-wrapper) - ("perl" ,perl))) - (arguments - `(#:configure-flags '("-DCMAKE_SKIP_BUILD_RPATH=FALSE" - "-DCMAKE_BUILD_WITH_INSTALL_RPATH=FALSE"))) - (home-page "http://www.llvm.org") - (synopsis "Optimizing compiler infrastructure") - (description - "LLVM is a compiler infrastructure designed for compile-time, link-time, -runtime, and idle-time optimization of programs from arbitrary programming -languages. It currently supports compilation of C and C++ programs, using -front-ends derived from GCC 4.0.1. A new front-end for the C family of -languages is in development. The compiler infrastructure includes mirror sets -of programming tools as well as libraries with equivalent functionality.") - (license license:ncsa))) - + (define-public ocl-icd (package (name "ocl-icd") @@ -207,3 +184,145 @@ of programming tools as well as libraries with equivalent functionality.") (description "This package provides the Khronos OpenCL headers") (home-page "https://www.khronos.org/registry/cl/") (license license:gpl2)))) + +(define (clang-runtime-from-llvm llvm hash) + (package + (name "clang-runtime") + (version (package-version llvm-3.7.1)) + (source + (origin + (method url-fetch) + (uri (string-append "http://llvm.org/releases/" + version "/compiler-rt-" version ".src.tar.xz")) + (sha256 + (base32 + "10c1mz2q4bdq9bqfgr3dirc6hz1h3sq8573srd5q5lr7m7j6jiwx")))) + (build-system cmake-build-system) + (native-inputs (package-native-inputs llvm)) + (inputs + `(("llvm" ,llvm))) + (arguments + `(;; Don't use '-g' during the build to save space. + #:build-type "Release")) + + (home-page "http://compiler-rt.llvm.org") + (synopsis "Runtime library for Clang/LLVM") + (description + "The \"clang-runtime\" library provides the implementations of run-time +functions for C and C++ programs. It also provides header files that allow C +and C++ source code to interface with the \"sanitization\" passes of the clang +compiler. In LLVM this library is called \"compiler-rt\".") + (license license:ncsa) + + ;; <http://compiler-rt.llvm.org/> doesn't list MIPS as supported. + (supported-systems (delete "mips64el-linux" %supported-systems)))) + +(define (clang-from-llvm llvm clang-runtime hash) + (package + (name "clang") + (version (package-version llvm-3.7.1)) + (source + (origin + (method url-fetch) + (uri (string-append "http://llvm.org/releases/" + version "/cfe-" version ".src.tar.xz")) + (sha256 + (base32 + "0x065d0w9b51xvdjxwfzjxng0gzpbx45fgiaxpap45ragi61dqjn")) + (patches (list (search-patch "clang-libc-search-path.patch"))))) + ;; Using cmake allows us to treat llvm as an external library. There + ;; doesn't seem to be any way to do this with clang's autotools-based + ;; build system. + (build-system cmake-build-system) + (native-inputs (package-native-inputs llvm)) + (inputs + `(("libxml2" ,libxml2) + ("libstdc++-4.9", libstdc++-4.9) + ("python" ,python-2) + ("gcc-lib" ,gcc "lib") + ,@(package-inputs llvm))) + (propagated-inputs + `(("llvm" ,llvm) + ("clang-runtime" ,clang-runtime))) + (arguments + `(#:configure-flags + (list "-DCLANG_INCLUDE_TESTS=True" + + ;; Find libgcc_s, crtbegin.o, and crtend.o. + (string-append "-DGCC_INSTALL_PREFIX=" + (assoc-ref %build-inputs "gcc-lib")) + + ;; Use a sane default include directory. + (string-append "-DC_INCLUDE_DIRS=" + (assoc-ref %build-inputs "libc") + "/include")) + + ;; Don't use '-g' during the build to save space. + #:build-type "Release" + + #:phases (modify-phases %standard-phases + (add-after + 'unpack 'set-glibc-file-names + (lambda* (#:key inputs #:allow-other-keys) + (let ((libc (assoc-ref inputs "libc")) + (compiler-rt (assoc-ref inputs "clang-runtime"))) + (substitute* "lib/Driver/Tools.cpp" + ;; Patch the 'getLinuxDynamicLinker' function to that + ;; it uses the right dynamic linker file name. + (("/lib64/ld-linux-x86-64.so.2") + (string-append libc + ,(glibc-dynamic-linker))) + + ;; Link to libclang_rt files from clang-runtime. + (("TC\\.getDriver\\(\\)\\.ResourceDir") + (string-append "\"" compiler-rt "\""))) + + ;; Same for libc's libdir, to allow crt1.o & co. to be + ;; found. + (substitute* "lib/Driver/ToolChains.cpp" + (("@GLIBC_LIBDIR@") + (string-append libc "/lib"))))))))) + + ;; Clang supports the same environment variables as GCC. + (native-search-paths + (list (search-path-specification + (variable "CPATH") + (files '("include"))) + (search-path-specification + (variable "LIBRARY_PATH") + (files '("lib" "lib64"))))) + + (home-page "http://clang.llvm.org") + (synopsis "C language family frontend for LLVM") + (description + "Clang is a compiler front end for the C, C++, Objective-C and +Objective-C++ programming languages. It uses LLVM as its back end. The Clang +project includes the Clang front end, the Clang static analyzer, and several +code analysis tools.") + (license license:ncsa))) + +(define-public llvm-3.7.1 + (package (inherit llvm) + (version "3.7.1") + (source + (origin + (method url-fetch) + (uri (string-append "http://llvm.org/releases/" + version "/llvm-" version ".src.tar.xz")) + (sha256 + (base32 + "1masakdp9g2dan1yrazg7md5am2vacbkb3nahb3dchpc1knr8xxy")))))) + +(define-public clang-runtime-3.7.1 + (clang-runtime-from-llvm + llvm-3.7.1 + "0dl1kbrhz96djsxqr61iw5h788s7ncfpfb7aayixky1bhdaydcx4")) + +(define-public clang-3.7.1 + (clang-from-llvm llvm clang-runtime + "12yv3jwdjcbkrx7zjm8wh4jrvb59v8fdw4mnmz3zc1jb00p9k07w")) + + + + + |