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authorEfraim Flashner2020-12-15 10:57:25 +0200
committerEfraim Flashner2020-12-15 11:00:55 +0200
commit5c785d70a310544b35bff69878e80c7138ac06d0 (patch)
treeea3d3d1ab4c1e6ad0e8c32136211a0583fa970a6 /gn
parent9400c210a12e5e9581cbd9a9b92b1741abf28165 (diff)
downloadguix-bioinformatics-5c785d70a310544b35bff69878e80c7138ac06d0.tar.gz
gn: rust-handlegraph-0.3, rust-ndarray-0.12 upstreamed
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/crates-io.scm70
-rw-r--r--gn/packages/genenetwork.scm1
2 files changed, 0 insertions, 71 deletions
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm
deleted file mode 100644
index 2c95366..0000000
--- a/gn/packages/crates-io.scm
+++ /dev/null
@@ -1,70 +0,0 @@
-(define-module (gn packages crates-io)
- #:use-module ((guix licenses) #:prefix license:)
- #:use-module (gnu packages)
- #:use-module (guix packages)
- #:use-module (guix download)
- #:use-module (guix utils)
- #:use-module (guix build-system cargo)
- #:use-module (gnu packages crates-io)
- #:use-module (gnu packages rust))
-
-;; Please keep these packages sorted alphabetically
-
-(define-public rust-handlegraph-0.3
- (package
- (name "rust-handlegraph")
- (version "0.3.0")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "handlegraph" version))
- (file-name
- (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "1sj100w4lpj7798pws85qrfrzsily5hhzh6j118rwf56sgic1yml"))))
- (build-system cargo-build-system)
- (arguments
- `(#:rust ,rust-1.42
- #:cargo-inputs
- (("rust-bstr" ,rust-bstr-0.2)
- ("rust-gfa" ,rust-gfa-0.6))))
- (home-page "https://github.com/chfi/rs-handlegraph")
- (synopsis "Library for use in variation graphs")
- (description
- "This package provides a Rust implementation of VG handle graph.")
- (license license:expat)))
-
-(define-public rust-ndarray-0.12
- (package
- (name "rust-ndarray")
- (version "0.12.1")
- (source
- (origin
- (method url-fetch)
- (uri (crate-uri "ndarray" version))
- (file-name (string-append name "-" version ".crate"))
- (sha256
- (base32
- "0a5rfwcbqnvbwi3nw5sfz6kf0flhmjxs64s0b4kxc6lhmyl81wvw"))))
- (build-system cargo-build-system)
- (arguments
- `(#:skip-build? #t
- #:cargo-inputs
- (("rust-itertools" ,rust-itertools-0.7)
- ("rust-matrixmultiply" ,rust-matrixmultiply-0.1)
- ("rust-num-complex" ,rust-num-complex-0.2)
- ;("rust-blas-src" ,rust-blas-src-0.2)
- ("rust-cblas-sys" ,rust-cblas-sys-0.1)
- ("rust-rustc-serialize" ,rust-rustc-serialize-0.3)
- ("rust-serde" ,rust-serde-1))
- #:cargo-development-inputs
- (("rust-defmac" ,rust-defmac-0.1)
- ("rust-quickcheck" ,rust-quickcheck-0.7)
- ("rust-rawpointer" ,rust-rawpointer-0.1))))
- (home-page "https://github.com/rust-ndarray/ndarray")
- (synopsis "n-dimensional container for general elements and for numerics")
- (description "@code{ndarray} implements an n-dimensional container for
-general elements and for numerics.")
- (license (list license:asl2.0
- license:expat))))
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index fb9af1d..4173157 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -43,7 +43,6 @@
#:use-module (past packages python)
#:use-module (gn packages bioinformatics)
#:use-module (gn packages twint)
- #:use-module (gn packages crates-io)
#:use-module (gn packages databases)
#:use-module (gn packages elixir)
#:use-module (gn packages gemma)