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| author | pjotrp | 2016-02-28 17:42:06 +0000 |
|---|---|---|
| committer | pjotrp | 2016-02-28 17:42:06 +0000 |
| commit | f82b7c5b7ef5bdb9761e48761f683d62d3a05c48 (patch) | |
| tree | 7c4f84ab1fb00e60f5f4123f514304139b342409 /gn | |
| parent | b280af1638843cc3b3ca14933a07b66076b0713d (diff) | |
| download | guix-bioinformatics-f82b7c5b7ef5bdb9761e48761f683d62d3a05c48.tar.gz | |
r-wgcna deps
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 24 | ||||
| -rw-r--r-- | gn/packages/genenetwork.scm | 1 |
2 files changed, 24 insertions, 1 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 92be2b4..b503e22 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -48,6 +48,28 @@ #:use-module (gn packages statistics) #:use-module (srfi srfi-1)) + +(define-public r-biocpreprocesscore + (package + (name "r-biocpreprocesscore") + (version "1.32.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "preprocessCore" version)) + (sha256 + (base32 + "07isghjkqm91rg37l1fzpjrbq36b7w4pbsi95wwh6a8qq7r69z1n")))) + (properties + `((upstream-name . "BiocpreprocessCore") + (r-repository . bioconductor))) + (build-system r-build-system) + (home-page "http://bioconductor.org/packages/preprocessCore") + (synopsis "Preprocess functions for Bioconductor") + (description + "A library of core preprocessing routines.") + (license license:lgpl2.0+))) + + (define-public r-wgcna (let ((commit "425bc170cc0873ddbd414675ac40f6d4d724c7cb")) (package @@ -78,7 +100,7 @@ ("r-impute" ,r-impute) ("r-matrixstats" ,r-matrixstats) ; ("r-parallel" ,r-parallel) - ; ("r-preprocesscore" ,r-preprocesscore) + ("r-biocpreprocesscore" ,r-biocpreprocesscore) ; ("r-splines" ,r-splines) ; ("r-stats" ,r-stats) ; ("r-survival" ,r-survival) diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index b77ccb4..033bf94 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -158,6 +158,7 @@ (propagated-inputs `( ;; propagated for development purposes ("python" ,python-2) ;; probably superfluous ("r" ,r) + ("r-wgcna" ,r-wgcna) ("redis" ,redis) ("mysql" ,mysql) ("gemma" ,gemma-git) |