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authorPjotr Prins2019-09-05 04:57:37 -0500
committerPjotr Prins2019-09-05 04:57:37 -0500
commitbfca823761d383ed31aef16363760fea09074e4e (patch)
treeabdf974b45260bec84f31a6821340527f9069ded /gn
parent96c20234e09648bf4990c96d46c0806281520dee (diff)
downloadguix-bioinformatics-bfca823761d383ed31aef16363760fea09074e4e.tar.gz
Fix genenetwork2
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/genenetwork.scm6
1 files changed, 3 insertions, 3 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 14243c2..27eb154 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -309,15 +309,15 @@ location of a putative QTL.")
(add-before 'install 'fix-paths
(lambda* (#:key inputs #:allow-other-keys)
(let* (
- (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2"))
+ ; (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2"))
(pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis"))
(plink2cmd (string-append (assoc-ref inputs "plink-ng-gn") "/bin/plink2"))
(gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma"))
)
(substitute* '("etc/default_settings.py")
- (("^GENENETWORK_FILES +=.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" ))
- (("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" ))
+ ; (("^GENENETWORK_FILES +=.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" ))
+ ; (("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" ))
(("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" ))
(("^GEMMA_COMMAND =.*") (string-append "GEMMA_COMMAND = \"" gemmacmd "\"\n" ))
)