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authorEfraim Flashner2019-09-09 04:00:33 -0500
committerEfraim Flashner2019-09-09 04:00:33 -0500
commitbd52cbc9878216debea6596d1f390c56f80ccd79 (patch)
tree0866d1caf519cc6806bb6f098a1247590176733b /gn
parente7a41d43999283adf126fb72423b15bdfa082d91 (diff)
downloadguix-bioinformatics-bd52cbc9878216debea6596d1f390c56f80ccd79.tar.gz
gn: Move r-shiny-gn to its own module.
* gn/packages/r-shiny.scm (r-shiny-gn, js-strftime-0.9, js-es5-shim-2): Move here.
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/javascript.scm31
-rw-r--r--gn/packages/r-shiny.scm113
-rw-r--r--gn/packages/statistics.scm95
3 files changed, 113 insertions, 126 deletions
diff --git a/gn/packages/javascript.scm b/gn/packages/javascript.scm
index cf229a8..465259a 100644
--- a/gn/packages/javascript.scm
+++ b/gn/packages/javascript.scm
@@ -1,7 +1,6 @@
(define-module (gn packages javascript)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages compression)
- #:use-module (gnu packages javascript)
#:use-module (gn packages web)
#:use-module (guix packages)
#:use-module (guix download)
@@ -540,33 +539,3 @@ not natively support it.")
(description "FileSaver.js is the solution to saving files on the
client-side, and is perfect for web apps that generates files on the client.")
(license license:expat)))
-
-(define-public js-strftime-0.9
- (package
- (inherit js-strftime)
- (name "js-strftime")
- (version "0.9.2")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url"https://github.com/samsonjs/strftime")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0g72286afcd2sxdsbm5k868ms6yqhbz0p4yfg33lmzbk9q42v9bs"))))))
-
-(define-public js-es5-shim-2
- (package
- (inherit js-es5-shim)
- (name "js-es5-shim")
- (version "2.0.12")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/es-shims/es5-shim")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1j4f0rba6p9bnqvw0riami01nkj0svl3flm7c7d6xydr2642zz8d"))))))
diff --git a/gn/packages/r-shiny.scm b/gn/packages/r-shiny.scm
new file mode 100644
index 0000000..732a1a3
--- /dev/null
+++ b/gn/packages/r-shiny.scm
@@ -0,0 +1,113 @@
+(define-module (gn packages r-shiny)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix utils)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system r)
+ #:use-module (gnu packages cran)
+ #:use-module (gnu packages javascript)
+ )
+
+(define-public r-shiny-gn
+ (package
+ (inherit r-shiny)
+ (name "r-shiny-gn")
+ (arguments
+ `(#:modules ((guix build r-build-system)
+ (guix build minify-build-system)
+ (guix build utils)
+ (ice-9 match))
+ #:imported-modules (,@%r-build-system-modules
+ (guix build minify-build-system))
+ #:phases
+ (modify-phases (@ (guix build r-build-system) %standard-phases)
+ (add-after 'unpack 'replace-bundled-minified-JavaScript
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((replace-file (lambda (old new)
+ (format #t "replacing ~a with ~a\n" old new)
+ (delete-file old)
+ (symlink new old))))
+ ;; NOTE: Files in ./inst/www/shared/datepicker/js/locales/
+ ;; contain just data. They are not minified code, so we don't
+ ;; replace them.
+ (with-directory-excursion "inst/www/shared"
+ (replace-file "bootstrap/shim/respond.min.js"
+ (string-append (assoc-ref inputs "js-respond")
+ "/share/javascript/respond.min.js"))
+ (replace-file "bootstrap/shim/html5shiv.min.js"
+ (string-append (assoc-ref inputs "js-html5shiv")
+ "/share/javascript/html5shiv.min.js"))
+ (replace-file "json2-min.js"
+ (string-append (assoc-ref inputs "js-json2")
+ "/share/javascript/json2.min.js"))
+ (replace-file "strftime/strftime-min.js"
+ (string-append (assoc-ref inputs "js-strftime")
+ "/share/javascript/strftime.min.js"))
+ (replace-file "highlight/highlight.pack.js"
+ (string-append (assoc-ref inputs "js-highlight")
+ "/share/javascript/highlight.min.js"))
+ (replace-file "datatables/js/jquery.dataTables.min.js"
+ (string-append (assoc-ref inputs "js-datatables")
+ "/share/javascript/jquery.dataTables.min.js"))
+ (replace-file "selectize/js/selectize.min.js"
+ (string-append (assoc-ref inputs "js-selectize")
+ "/share/javascript/selectize.min.js"))
+ (replace-file "selectize/js/es5-shim.min.js"
+ (string-append (assoc-ref inputs "js-es5-shim")
+ "/share/javascript/es5-shim.min.js"))
+ (for-each (match-lambda
+ ((source . target)
+ (delete-file target)
+ (minify source #:target target)))
+ '(("jqueryui/jquery-ui.js" .
+ "jqueryui/jquery-ui.min.js")
+ ("datepicker/js/bootstrap-datepicker.js" .
+ "datepicker/js/bootstrap-datepicker.min.js")
+ ("ionrangeslider/js/ion.rangeSlider.js" .
+ "ionrangeslider/js/ion.rangeSlider.min.js")
+ ("bootstrap/js/bootstrap.js" .
+ "bootstrap/js/bootstrap.min.js")
+ ("shiny.js" .
+ "shiny.min.js")
+ ("jquery.js" .
+ "jquery.min.js")))))
+ #t)))))
+ (inputs
+ `(("js-datatables" ,js-datatables)
+ ("js-html5shiv" ,js-html5shiv)
+ ("js-json2" ,js-json2)
+ ("js-respond" ,js-respond)
+ ("js-selectize" ,js-selectize)
+ ("js-strftime" ,js-strftime-0.9)
+ ("js-highlight" ,js-highlight)
+ ("js-es5-shim" ,js-es5-shim-2)))))
+
+(define-public js-strftime-0.9
+ (package
+ (inherit js-strftime)
+ (name "js-strftime")
+ (version "0.9.2")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url"https://github.com/samsonjs/strftime")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0g72286afcd2sxdsbm5k868ms6yqhbz0p4yfg33lmzbk9q42v9bs"))))))
+
+(define-public js-es5-shim-2
+ (package
+ (inherit js-es5-shim)
+ (name "js-es5-shim")
+ (version "2.0.12")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/es-shims/es5-shim")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1j4f0rba6p9bnqvw0riami01nkj0svl3flm7c7d6xydr2642zz8d"))))))
diff --git a/gn/packages/statistics.scm b/gn/packages/statistics.scm
index b21ad47..134213a 100644
--- a/gn/packages/statistics.scm
+++ b/gn/packages/statistics.scm
@@ -367,98 +367,3 @@ functions in total. Subject areas covered by the library include:
differential equations, linear algebra, Fast Fourier Transforms and random
numbers.")
(license license:gpl3+)))
-
-(define-public r-shiny-gn
- (package
- (inherit r-shiny)
- (name "r-shiny-gn")
- (version "1.2.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/rstudio/shiny.git")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1kl3dh68h4cnrm3rqn9pddk5n6bsmr5x0626bkfv0qqi0q92zin4"))))
- (arguments
- `(#:modules ((guix build r-build-system)
- (guix build minify-build-system)
- (guix build utils)
- (ice-9 match))
- #:imported-modules (,@%r-build-system-modules
- (guix build minify-build-system))
- #:phases
- (modify-phases (@ (guix build r-build-system) %standard-phases)
- (add-after 'unpack 'replace-bundled-minified-JavaScript
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((replace-file (lambda (old new)
- (format #t "replacing ~a with ~a\n" old new)
- (delete-file old)
- (symlink new old))))
- ;; NOTE: Files in ./inst/www/shared/datepicker/js/locales/
- ;; contain just data. They are not minified code, so we don't
- ;; replace them.
- (with-directory-excursion "inst/www/shared"
- (replace-file "bootstrap/shim/respond.min.js"
- (string-append (assoc-ref inputs "js-respond")
- "/share/javascript/respond.min.js"))
- (replace-file "bootstrap/shim/html5shiv.min.js"
- (string-append (assoc-ref inputs "js-html5shiv")
- "/share/javascript/html5shiv.min.js"))
- (replace-file "json2-min.js"
- (string-append (assoc-ref inputs "js-json2")
- "/share/javascript/json2.min.js"))
- (replace-file "strftime/strftime-min.js"
- (string-append (assoc-ref inputs "js-strftime")
- "/share/javascript/strftime.min.js"))
- (replace-file "highlight/highlight.pack.js"
- (string-append (assoc-ref inputs "js-highlight")
- "/share/javascript/highlight.min.js"))
- (replace-file "datatables/js/jquery.dataTables.min.js"
- (string-append (assoc-ref inputs "js-datatables")
- "/share/javascript/jquery.dataTables.min.js"))
- (replace-file "selectize/js/selectize.min.js"
- (string-append (assoc-ref inputs "js-selectize")
- "/share/javascript/selectize.min.js"))
- (replace-file "selectize/js/es5-shim.min.js"
- (string-append (assoc-ref inputs "js-es5-shim")
- "/share/javascript/es5-shim.min.js"))
- (for-each (match-lambda
- ((source . target)
- (delete-file target)
- (minify source #:target target)))
- '(("jqueryui/jquery-ui.js" .
- "jqueryui/jquery-ui.min.js")
- ("datepicker/js/bootstrap-datepicker.js" .
- "datepicker/js/bootstrap-datepicker.min.js")
- ("ionrangeslider/js/ion.rangeSlider.js" .
- "ionrangeslider/js/ion.rangeSlider.min.js")
- ("bootstrap/js/bootstrap.js" .
- "bootstrap/js/bootstrap.min.js")
- ("shiny.js" .
- "shiny.min.js")
- ("jquery.js" .
- "jquery.min.js")))))
- #t)))))
- (propagated-inputs
- `(("r-crayon" ,r-crayon)
- ("r-httpuv" ,r-httpuv)
- ("r-mime" ,r-mime)
- ("r-jsonlite" ,r-jsonlite)
- ("r-xtable" ,r-xtable)
- ("r-digest" ,r-digest)
- ("r-htmltools" ,r-htmltools)
- ("r-r6" ,r-r6)
- ("r-sourcetools" ,r-sourcetools)))
- (inputs
- `(("js-datatables" ,js-datatables)
- ("js-html5shiv" ,js-html5shiv)
- ("js-json2" ,js-json2)
- ("js-respond" ,js-respond)
- ("js-selectize" ,js-selectize)
- ("js-strftime" ,js-strftime-0.9)
- ("js-highlight" ,js-highlight)
- ("js-es5-shim" ,js-es5-shim-2)))))