diff options
| author | Efraim Flashner | 2021-03-16 06:48:49 -0500 |
|---|---|---|
| committer | Efraim Flashner | 2021-03-16 06:49:47 -0500 |
| commit | 2955dd2850b81658c22f2d600805a204ef47b565 (patch) | |
| tree | 97a4bb2eeb9529c4fcd72a8a8a419a3c4c45dba1 /gn/services | |
| parent | 1f72c16d946cec6095876e733f22dac69ecce3f3 (diff) | |
| download | guix-bioinformatics-2955dd2850b81658c22f2d600805a204ef47b565.tar.gz | |
gn: bnw: updates
wrap run_scripts for octave invocations with coreutils
adjust service
Diffstat (limited to 'gn/services')
| -rw-r--r-- | gn/services/bnw-container.scm | 17 |
1 files changed, 12 insertions, 5 deletions
diff --git a/gn/services/bnw-container.scm b/gn/services/bnw-container.scm index 4046a4f..b812652 100644 --- a/gn/services/bnw-container.scm +++ b/gn/services/bnw-container.scm @@ -2,6 +2,7 @@ (use-modules (gnu) (gn packages bnw) + (guix build utils) (guix records) (ice-9 match)) (use-service-modules networking web) @@ -20,14 +21,18 @@ (define bnw-activation (match-lambda - (($ <bnw-configuration> package deploy-directory port) + (($ <bnw-configuration> package _ port) #~(begin - (let ((genenet "/var/lib/genenet/bnw")) - ;(mkdir-p #$deploy-directory) - ;(copy-recursively #$package #$deploy-directory) + (let ((genenet "/var/lib/genenet/bnw") + (php-fpm-uid (passwd:uid (getpw "php-fpm"))) + (php-fpm-gid (passwd:gid (getpw "php-fpm")))) (mkdir-p genenet) (copy-recursively #$(file-append package "/var_lib_genenet_bnw") genenet) - (invoke #$(file-append coreutils "/bin/chmod") "a+w" genenet)))))) + (for-each (lambda (file-name) + (make-file-writable file-name) + (chown file-name php-fpm-uid php-fpm-gid)) + (find-files genenet + #:directories? #t))))))) (define bnw-nginx-config (match-lambda @@ -85,3 +90,5 @@ ;(bnw-configuration ; (port '("8888"))) )))) + +;; guix system container -L ~/workspace/guix-past/modules/ -L ~/workspace/guix-bioinformatics/ ~/workspace/guix-bioinformatics/gn/services/bnw-container.scm --network |