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| author | Pjotr Prins | 2020-05-22 11:12:38 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2020-05-22 11:12:38 -0500 |
| commit | 4659b77ec38f46014e325c4294796c1a859e2646 (patch) | |
| tree | 8d45e4d0db7f9e37d58e1252ab307c759acda8e1 /gn/packages | |
| parent | 3d6be821a8085cddf0e9011a99a386daa15d0cc6 (diff) | |
| download | guix-bioinformatics-4659b77ec38f46014e325c4294796c1a859e2646.tar.gz | |
Updated Gemma build
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/gemma.scm | 29 |
1 files changed, 5 insertions, 24 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index 9bbc960..758832e 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -141,10 +141,10 @@ (define-public gemma-gn2 ; guix candidate - generic openblas version - (let ((commit "6b1e007ea9ead6123e9d7f078f3e59054047521d")) + (let ((commit "b309569fe9497befa008ac2d2cbc04f2e861ce76")) (package (name "gemma-gn2") - (version (string-append "0.98-" (string-take commit 7))) + (version (string-append "0.98.2-" (string-take commit 7))) (source (origin (method git-fetch) (uri (git-reference @@ -153,32 +153,21 @@ (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "0gg4rrxcjbhfqfdaljnn86yffaa0n2d2j67j2gv47wvgrnn8fvwz")))) + "0bmwp2g7xm1zpixlljpf7zzsgj8f34pyxra7by30yxl1r52kfjdd")))) (inputs `( - ; ("gfortran:lib" ,gfortran "lib") ("gsl" ,gsl) - ("eigen" ,eigen) ("shunit2" ,shunit2) - ; ("lapack" ,lapack) ("openblas" ,openblas) ("zlib" ,zlib) )) (native-inputs ; for running tests `(("perl" ,perl) ("which" ,which) - ; ("gcc@8" ,gcc-8) )) (build-system gnu-build-system) (arguments - `(#:make-flags - (list - (string-append "EIGEN_INCLUDE_PATH=" - (assoc-ref %build-inputs "eigen") - "/include/eigen3/") - ) - #:phases - ; "/include/eigen3/" + `(#:phases (modify-phases %standard-phases (delete 'configure) (add-before 'build 'bin-mkdir @@ -204,22 +193,14 @@ genome-wide association studies (GWAS).") (inherit gemma-gn2) (name "gemma-gn2-git") (inputs `( - ; ("gfortran:lib" ,gfortran "lib") ("gsl" ,gsl) - ("eigen" ,eigen) ("shunit2" ,shunit2) ("openblas" ,openblas-git) ("zlib" ,zlib) )) (arguments - `(#:make-flags - (list - (string-append "EIGEN_INCLUDE_PATH=" - (assoc-ref %build-inputs "eigen") - "/include/eigen3/") - ) + `( #:phases - ; "/include/eigen3/" (modify-phases %standard-phases (delete 'configure) (add-before 'build 'bin-mkdir |