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authorPjotr Prins2020-05-28 06:35:16 -0500
committerPjotr Prins2020-05-28 06:35:16 -0500
commit04270e097988523dee6fbdc5ccf72e9c850a8626 (patch)
tree52aab9f15e9389e9808b7e86ec9acba144c7724c /gn/packages
parent390cafcef89dc7f8146df0e8b2183a5d47c90f9a (diff)
downloadguix-bioinformatics-04270e097988523dee6fbdc5ccf72e9c850a8626.tar.gz
Updating gemma to build on latest
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/gemma.scm6
-rw-r--r--gn/packages/genenetwork.scm2
2 files changed, 4 insertions, 4 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index 758832e..24be94c 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -141,7 +141,7 @@
(define-public gemma-gn2 ; guix candidate - generic openblas version
- (let ((commit "b309569fe9497befa008ac2d2cbc04f2e861ce76"))
+ (let ((commit "dfd0066a1e483ce807efc019f0b2de8decd9e33c"))
(package
(name "gemma-gn2")
(version (string-append "0.98.2-" (string-take commit 7)))
@@ -153,7 +153,7 @@
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "0bmwp2g7xm1zpixlljpf7zzsgj8f34pyxra7by30yxl1r52kfjdd"))))
+ "0bdi4rgg5k6n060lvp2mvrwawmqnwmdn8gd2rdbmgbgzgs88dsml"))))
(inputs `(
("gsl" ,gsl)
("shunit2" ,shunit2)
@@ -211,7 +211,7 @@ genome-wide association studies (GWAS).")
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(install-file "bin/gemma" (string-append out "/bin"))))))
- #:tests? #f
+ ; #:tests? #f
#:parallel-tests? #f))
))
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index ecba3d0..3b7cc71 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -263,7 +263,7 @@ location of a putative QTL.")
("r-wgcna" ,r-wgcna)
("redis" ,redis)
("mariadb" ,mariadb)
- ("gemma" ,gemma-gn2-git)
+ ("gemma" ,gemma-gn2)
("gemma-wrapper" ,gemma-wrapper)
; ("genenetwork2-files-small" ,genenetwork2-files-small)
("plink-ng-gn" ,plink-ng-gn)