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authorpjotrp2017-09-20 12:52:05 +0000
committerpjotrp2017-09-20 12:52:05 +0000
commitc6d8c68d8f85788ca489cc92241a2c2578bb43d8 (patch)
tree1a74b6cb7877a5a0996512a2d040f762cc553626 /gn/packages
parente045fd164d95a642a7dbb397cbfd280445fb7cdb (diff)
downloadguix-bioinformatics-c6d8c68d8f85788ca489cc92241a2c2578bb43d8.tar.gz
Adding gn-server package for Elixir
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/genenetwork.scm60
1 files changed, 37 insertions, 23 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 004c2fe..7e5339f 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -21,6 +21,7 @@
#:use-module (gnu packages compression)
#:use-module (gnu packages databases)
#:use-module (gnu packages cpio)
+ #:use-module (gnu packages elixir)
#:use-module (gnu packages file)
#:use-module (gnu packages gcc)
#:use-module (gnu packages graphviz)
@@ -90,30 +91,43 @@
(description #f)
(license #f)))
-(define-public qn-server ; guix obsolete - but used in GN2
- (let ((commit "dd9c7fb2a9d5fa40b4054e1bcb7c57905d98d5f8"))
- (package
- (name "qn-server")
- (version (string-append "1.1-gn2-" (string-take commit 7) ))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- ;; (url "https://github.com/genenetwork/genenetwork2.git")
- (url "https://github.com/pjotrp/QTLreaper.git")
- (commit commit)))
- (file-name (string-append name "-" (string-take commit 7)))
- (sha256
- (base32
- "1ldcvyk8y8w6f4ci04hzx85sknd5a3h424p5bfi4fz32sm2p7fja"))))
- (build-system python-build-system)
+(define-public gn-server
+ (let ((md5 "93e745e9c"))
+ (package
+ (name "gn-server")
+ (version "0.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri "http://files.genenetwork.org/raw_database/md5sum.txt") ; any old file
+ (file-name (string-append name "-" md5))
+ (sha256
+ (base32 "1cnkiwid4h0nnf93rm647ji9vhfzjl23arp1xj374la7mmic9jqs"))))
+ (build-system trivial-build-system)
+ (native-inputs `(("unzip" ,unzip)
+ ("source" ,source)))
+ (inputs `(("sassc" ,sassc)))
+ (propagated-inputs
+ `(("python" ,python)
+ ("elixir" ,elixir)
+ ("mysql" ,mysql)
+ ))
(arguments
- `(#:python ,python-2
- #:tests? #f)) ; no 'setup.py test' really!
- (home-page "")
- (synopsis "GeneNetwork REST API")
- (description
-"")
- (license license:gpl2+))))
+ `(#:modules ((guix build utils))
+ #:builder
+ (begin
+ (use-modules (guix build utils))
+ (let ((target (string-append (assoc-ref %outputs "out")
+ "/share")))
+ (write target)
+ (mkdir-p target)
+ ; (copy-recursively (assoc-ref %build-inputs "source") target)
+ #t))))
+
+ (home-page "http://github.com/genenetwork/gn_server/")
+ (synopsis "GN REST server API")
+ (description "REST Server")
+ (license license:agpl3+))))
(define-public qtlreaper
(let ((commit "dd9c7fb2a9d5fa40b4054e1bcb7c57905d98d5f8"))