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authorEfraim Flashner2020-04-07 21:09:24 +0300
committerEfraim Flashner2020-04-07 21:09:24 +0300
commitba6cc50345c46463cb3dda0842cd85015a2b20e9 (patch)
tree0f312bce0282cdd6e4a5128fc499c411c4957f77 /gn/packages
parent14dc7e6f85f204d01fc5a96e986469c0355e87fb (diff)
downloadguix-bioinformatics-ba6cc50345c46463cb3dda0842cd85015a2b20e9.tar.gz
gn: Upstream 2 python packages
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/python.scm106
1 files changed, 0 insertions, 106 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index 88f0156..17cd7ae 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -1096,112 +1096,6 @@ spreadsheets without the need for COM objects.")
(description "")
(license license:bsd-4)))
-(define-public python-ipython-cluster-helper
- (package
- (name "python-ipython-cluster-helper")
- (version "0.6.4")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "ipython-cluster-helper" version))
- (sha256
- (base32
- "1l6mlwxlkxpbvawfwk6qffich7ahg9hq2bxfissgz6144p3k4arj"))
- (modules '((guix build utils)))
- (snippet
- '(begin (substitute* "requirements.txt"
- (("ipython.*") "ipython\n"))
- #t))))
- (build-system python-build-system)
- (arguments
- `(#:tests? #f ; Test suite can't find IPython.
- #:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key inputs outputs tests? #:allow-other-keys)
- (if tests?
- (begin
- (setenv "HOME" (getcwd))
- (add-installed-pythonpath inputs outputs)
- (invoke "python" "example/example.py" "--local"))
- #t))))))
- (propagated-inputs
- `(("python-ipyparallel" ,python-ipyparallel)
- ("python-ipython" ,python-ipython)
- ("python-netifaces" ,python-netifaces)
- ("python-pyzmq" ,python-pyzmq)
- ("python-setuptools" ,python-setuptools)
- ("python-six" ,python-six)))
- (home-page "https://github.com/roryk/ipython-cluster-helper")
- (synopsis
- "Simplify IPython cluster start up and use for multiple schedulers")
- (description
- "@code{ipython-cluster-helper} creates a throwaway parallel IPython
-profile, launches a cluster and returns a view. On program exit it shuts the
-cluster down and deletes the throwaway profile.")
- (license license:expat)))
-
-(define-public python2-ipython-cluster-helper
- (package-with-python2 python-ipython-cluster-helper))
-
-(define-public python-ipyparallel
- (package
- (name "python-ipyparallel")
- (version "6.2.4")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "ipyparallel" version))
- (sha256
- (base32
- "0rf0dbpxf5z82bw8lsjj45r3wdd4wc74anz4wiiaf2rbjqlb1ivn"))))
- (build-system python-build-system)
- (arguments
- `(#:tests? #f ; RuntimeError: IO Loop failed to start
- #:phases
- (modify-phases %standard-phases
- (add-before 'check 'prepare-for-tests
- (lambda _
- (setenv "HOME" (getcwd))
- #t)))))
- (propagated-inputs
- `(("python-dateutil" ,python-dateutil)
- ("python-decorator" ,python-decorator)
- ("python-ipykernel" ,python-ipykernel)
- ("python-ipython" ,python-ipython)
- ("python-ipython-genutils" ,python-ipython-genutils)
- ("python-jupyter-client" ,python-jupyter-client)
- ("python-pyzmq" ,python-pyzmq)
- ("python-tornado" ,python-tornado)
- ("python-traitlets" ,python-traitlets)))
- (native-inputs
- `(("python-ipython" ,python-ipython)
- ("python-mock" ,python-mock)
- ("python-nose" ,python-nose)
- ("python-pytest" ,python-pytest)
- ("python-pytest-cov" ,python-pytest-cov)
- ("python-testpath" ,python-testpath)))
- (home-page "https://ipython.org/")
- (synopsis "Interactive Parallel Computing with IPython")
- (description
- "@code{ipyparallel} is a Python package and collection of CLI scripts for
-controlling clusters for Jupyter. @code{ipyparallel} contains the following
-CLI scripts:
-@enumerate
-@item ipcluster - start/stop a cluster
-@item ipcontroller - start a scheduler
-@item ipengine - start an engine
-@end enumerate")
- (license license:bsd-3)))
-
-(define-public python2-ipyparallel
- (let ((ipyparallel (package-with-python2 python-ipyparallel)))
- (package
- (inherit ipyparallel)
- (propagated-inputs
- `(("python2-futures" ,python2-futures)
- ,@(package-propagated-inputs ipyparallel))))))
-
(define-public python-admiral
(package
(name "python-admiral")