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authorpjotrp2017-01-21 07:09:49 +0000
committerpjotrp2017-01-21 07:09:49 +0000
commit5fa0e726f7e76ebe7dc098fb3fc786f7ce67d540 (patch)
tree7c26f79484f200315f94d297a4d5632425375cd8 /gn/packages
parent2b219d0f250019c86aa1ff2466d511655bdb4daa (diff)
downloadguix-bioinformatics-5fa0e726f7e76ebe7dc098fb3fc786f7ce67d540.tar.gz
Debug version of sambamba
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/bioinformatics.scm7
1 files changed, 3 insertions, 4 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index c1c1a2c..5d6f04d 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -921,20 +921,19 @@ association studies (GWAS).")
(license license:gpl3))))
(define-public sambamba
- (let ((commit "7518a1ff0f07f2013601c05564e1ad1256b479da"))
+ (let ((commit "5a33d571339c966477c1f70ed08f64051f7b41c1"))
(package
(name "sambamba")
(version (string-append "0.6.5-" (string-take commit 7)))
(source (origin
(method git-fetch)
(uri (git-reference
- ;; (url "https://github.com/roelj/sambamba.git")
(url "https://github.com/pjotrp/sambamba.git")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "14wpj05hycz9fqrzc2mqx5vl4h42kx1sms9dqpapz46vwc2d0zz3"))))
+ "05nlhwjw17igcwiz4pq0r4f8flrqcy4065fhx4nhpc0g65p70mi5"))))
(build-system gnu-build-system)
(native-inputs
`(("ldc" ,ldc)
@@ -996,7 +995,7 @@ association studies (GWAS).")
(replace
'build
(lambda* (#:key inputs make-flags #:allow-other-keys)
- (zero? (system* "make" "-f" "Makefile.guix" "sambamba-ldmd2" "CC=gcc" "D_COMPILER=ldc2"
+ (zero? (system* "make" "-f" "Makefile.guix" "sambamba-ldmd2-debug" "CC=gcc" "D_COMPILER=ldc2"
(string-append "LDC_LIB_PATH="
(assoc-ref inputs "ldc")
"/lib")))))