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authorPjotr Prins2019-09-06 05:00:00 -0500
committerPjotr Prins2019-09-06 05:00:00 -0500
commit9e30dcaa4ffd9a1ec8d988483f0d2e8394b08e29 (patch)
tree5e5e03d6cfc0fd1b5e788a6282e055d39d028c80 /gn/packages
parent5464957a5ec7cd831ed1aa5f73b25635a9c5860a (diff)
downloadguix-bioinformatics-9e30dcaa4ffd9a1ec8d988483f0d2e8394b08e29.tar.gz
Add link to sources
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/genenetwork.scm7
-rw-r--r--gn/packages/python.scm35
2 files changed, 28 insertions, 14 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 46e0407..175ec69 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -251,10 +251,13 @@ location of a putative QTL.")
("nginx" ,nginx)
("python2-flask" ,python2-flask)
("gunicorn" ,gunicorn)
- ("python2-pillow" ,python2-pillow)
+ ; ("python2-pillow" ,python2-pillow) - for later!
+ ("python2-pil1" ,python2-pil1-gn)
+ ("python2-piddle-gn" ,python2-piddle-gn)
("python2-cssselect" ,python2-cssselect)
("python2-elasticsearch" ,python2-elasticsearch)
- ("python2-htmlgen" ,python2-htmlgen)
+ ; ("python2-htmlgen" ,python2-htmlgen)
+ ("python2-htmlgen-gn" ,python2-htmlgen-gn)
("python2-jinja2" ,python2-jinja2)
("python2-sqlalchemy" ,python2-sqlalchemy)
("python2-flask-sqlalchemy" ,python2-flask-sqlalchemy)
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index 1a85744..29d600f 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -505,6 +505,13 @@ Python 3 support.")
(define-public python2-shellescape
(package-with-python2 python-shellescape))
+
+; env IPFS_PATH=/export/ipfs/ ipfs add -r htmlgen/
+; added QmUD9LMJTE8q5wYkUyAwLdz2QCGXWt457iFnyYQAGfsN3j htmlgen/htmlgen-2.2.2-gn.tar.gz
+; added QmZLWsPHLFTU3hWAfdTwj3RXFrS8Ma7KEixne1suWuYqeG htmlgen
+; penguin2:~/tmp$ env IPFS_PATH=/export/ipfs/ ipfs pin add -r QmZLWsPHLFTU3hWAfdTwj3RXFrS8Ma7KEixne1suWuYqeG
+; pinned QmZLWsPHLFTU3hWAfdTwj3RXFrS8Ma7KEixne1suWuYqeG recursively
+
(define-public python2-htmlgen-gn ; guix obsolete
(package
(name "python2-htmlgen-gn")
@@ -513,8 +520,7 @@ Python 3 support.")
(method url-fetch)
;; http://files.genenetwork.org/software/contrib/htmlgen-2.2.2-gn.tar.gz
(uri (string-append
- "http://files.genenetwork.org/software/contrib/htmlgen-"
-version "-gn.tar.gz"))
+ "http://ipfs.genenetwork.org/ipfs/QmZLWsPHLFTU3hWAfdTwj3RXFrS8Ma7KEixne1suWuYqeG/htmlgen-" version "-gn.tar.gz"))
(sha256
(base32
"1lwsk56rymhrma46cbyh3g64ksmq1vsih3qkrc2vh0lpba825y7r"))
@@ -567,11 +573,11 @@ project)")
(source (origin
(method url-fetch)
(uri (string-append
- "http://files.genenetwork.org/software/contrib/Imaging-"
- version "-gn.tar.gz"))
+ ; "http://files.genenetwork.org/software/contrib/Imaging-"
+ "http://effbot.org/downloads/Imaging-1.1.6.tar.gz"))
(sha256
(base32
- "0jhinbcq2k899c76m1jc5a3z39k6ajghiavpzi6991hbg6xhxdzg"))
+ "141zidl3s9v4vfi3nsbg42iq1lc2a932gprqr1kij5hrnn53bmvx"))
(modules '((guix build utils)))
(snippet
;; Adapt to newer freetype. As the package is unmaintained upstream,
@@ -620,18 +626,23 @@ capabilities to the Python interpreter.")
"file://README"
"See 'README' in the distribution."))))
+; agrigento:~/izip/git/opensource/genenetwork$ scp ./contrib/piddle-1.0.15-gn.tgz penguin2.genenetwork.org
+; penguin2:~$ env IPFS_PATH=/export/ipfs/ ipfs add piddle-1.0.15-gn.tgz
+; added QmSMptV2VALL2s7igqRqKJ8ALNvhqFRUYVG54kEF7ac6ve piddle-1.0.15-gn.tgz
+; penguin2:~$ env IPFS_PATH=/export/ipfs/ ipfs pin add -r QmSMptV2VALL2s7igqRqKJ8ALNvhqFRUYVG54kEF7ac6ve
+; pinned QmSMptV2VALL2s7igqRqKJ8ALNvhqFRUYVG54kEF7ac6ve recursively
+
(define-public python2-piddle-gn ; guix obsolete
(package
- (name "python2-piddle")
- (version "1.0.15-gn-PIL1")
+ (name "python2-piddle-gn")
+ (version "1.0.15-gn")
(source (origin
(method url-fetch)
(uri (string-append
- "http://files.genenetwork.org/software/contrib/piddle-"
-version ".tgz"))
+ "http://ipfs.genenetwork.org/ipfs/QmeKcMb8AdwZNUcAaTASVpZ39ipwJn8eBoqqDfoCzQYmNk/piddle-" version ".tgz"))
(sha256
(base32
- "1m89xp0d7d5a0nd483qir7zq99ci6wab1r018i698wjdpr8zf86b"))))
+ "05gjnn31v7p0kh58qixrpcizcxqf3b7zv4a5kk8nsmqwgxh0c6gq"))))
(build-system python-build-system)
(native-inputs
@@ -719,7 +730,7 @@ NOTE: This package is superseded by python-pillow")
"See 'README' in the distribution."))))
; upstream version won't work with gn2
-(define-public python2-piddle-1.0.15
+(define-public python2-piddle
(package
(name "python2-piddle")
(version "1.0.15")
@@ -739,7 +750,7 @@ NOTE: This package is superseded by python-pillow")
(native-inputs
`(("unzip" ,unzip)))
(propagated-inputs
- `(("python2-pil" ,python2-pil1)))
+ `(("python2-pil" ,python2-pil1-gn)))
(home-page "http://www.strout.net/info/coding/python/piddle/")
(synopsis "Plug-In Drawing, Does Little Else")
(description "PIDDLE is designed for vector graphics -- i.e., drawing of