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authorPjotr Prins2018-12-12 04:00:26 -0600
committerPjotr Prins2018-12-12 04:00:26 -0600
commit7cdcccfd9cf87915969e0706042673114d2b1d91 (patch)
tree9a88488880b3aafe8f8d9fa1eb06523e04f0c692 /gn/packages
parentf65893ba096bc4b190d9101cca8fe490af80109e (diff)
downloadguix-bioinformatics-7cdcccfd9cf87915969e0706042673114d2b1d91.tar.gz
CWL
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/cwl.scm3
-rw-r--r--gn/packages/python.scm9
2 files changed, 11 insertions, 1 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm
index 6980bb8..9b75c2b 100644
--- a/gn/packages/cwl.scm
+++ b/gn/packages/cwl.scm
@@ -37,13 +37,14 @@
("python-setuptools" ,python-setuptools)
("python-pytest-cov" ,python-pytest-cov)
("python-pytest-runner" ,python-pytest-runner)
+ ("python-rdflib" ,python-rdflib)
("python-typing-extensions" ,python-typing-extensions)
- ("python-prov" ,python-prov)
("python-pyparsing" ,python-pyparsing)
("python-subprocess32" ,python-subprocess32)
))
(propagated-inputs
`(("python-schema-salad" ,python-schema-salad)
+ ("python-prov" ,python-prov)
("python-html5lib" ,python-html5lib)
))
; (arguments `(#:tests? #f)) ;; CWL includes no tests.
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index fa9696f..ef30812 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -11,6 +11,7 @@
#:use-module (gnu packages ghostscript)
#:use-module (gnu packages glib)
#:use-module (gnu packages gnupg)
+ #:use-module (gnu packages graphviz)
#:use-module (gnu packages gtk)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
@@ -170,6 +171,14 @@ functions.")
(base32
"1a9h406laclxalmdny37m0yyw7y17n359akclbahimdggq853jd0"))))
(build-system python-build-system)
+ (inputs
+ `(("python-rdflib" ,python-rdflib)
+ ("python-lxml" ,python-lxml)
+ ("python-networkx" ,python-networkx)
+ ("python-dateutil" ,python-dateutil)
+ ("python-pydot" ,python-pydot)
+ ("graphviz" ,graphviz) ; for testing
+ ))
(home-page "https://github.com/trungdong/prov")
(synopsis
"A library for W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)")