aboutsummaryrefslogtreecommitdiff
path: root/gn/packages
diff options
context:
space:
mode:
authorpjotrp2017-01-24 09:29:44 +0000
committerpjotrp2017-01-24 09:29:44 +0000
commit77990bdcb4a85ed044dd5dd9bf49f2515b9ce742 (patch)
treec00b5e4542f6138c90fb2995577c430b45cbfdc5 /gn/packages
parentf8c952c5ae8594fcbd95c680ce3b6bcbfe563a6f (diff)
downloadguix-bioinformatics-77990bdcb4a85ed044dd5dd9bf49f2515b9ce742.tar.gz
sambamba: remove lz4 and rdmd
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/bioinformatics.scm11
1 files changed, 0 insertions, 11 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 701ac1d..e16c28e 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -941,20 +941,12 @@ association studies (GWAS).")
`(("ldc" ,ldc)
("lz4" ,lz4)
("coreutils" ,coreutils) ; for env
- ;; ("rdmd" ,rdmd)
("zlib" ,zlib)
("perl" ,perl) ; Needed for htslib
("ruby" ,ruby) ; Needed for htslib
("python" ,python-2) ; Needed for htslib
("gcc" ,gcc)
("which" ,which)
- ; ("lz4-src"
- ; ,(origin
- ; (method url-fetch)
- ; (uri "https://github.com/Cyan4973/lz4/archive/160661c7a4cbf805f4af74d2e3932a17a66e6ce7.tar.gz")
- ; (file-name (string-append "lz4-" (string-take commit 7) ".tar.gz" ))
- ; (sha256
- ; (base32 "131nnbsd5dh7c8sdqzc9kawh3mi0qi4qxznv7zhzfszlx4g2fd20"))))
("htslib-src"
,(origin
(method url-fetch)
@@ -988,9 +980,6 @@ association studies (GWAS).")
(and (with-directory-excursion "htslib"
(zero? (system* "tar" "xvf" (assoc-ref inputs "htslib-src")
"--strip-components=1")))
- ; (with-directory-excursion "lz4"
- ; (zero? (system* "tar" "xvf" (assoc-ref inputs "lz4-src")
- ; "--strip-components=1")))
(zero? (system* "rm" "-r" "BioD"))
(zero? (system* "ln" "--symbolic" "--no-target-directory"
(assoc-ref inputs "biod-src") "BioD")))))