aboutsummaryrefslogtreecommitdiff
path: root/gn/packages
diff options
context:
space:
mode:
authorEfraim Flashner2020-01-16 01:49:04 -0600
committerEfraim Flashner2020-01-16 01:49:04 -0600
commit586aeb8ece73707d858a1efb787f3876c821eef3 (patch)
tree43e42f8ad9a4735e6e220b4d88b729cf7d22e29b /gn/packages
parent06d9f9655d124803c911b8bcade0b97e08168c12 (diff)
downloadguix-bioinformatics-586aeb8ece73707d858a1efb787f3876c821eef3.tar.gz
gn: python2-htmlgen-gn: Fixup package
Re-indented the whole package Updated the package to work with python-2.7.
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/python.scm106
1 files changed, 54 insertions, 52 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index c3e01fd..9c097e3 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -486,58 +486,60 @@ Python 3 support.")
; pinned QmZLWsPHLFTU3hWAfdTwj3RXFrS8Ma7KEixne1suWuYqeG recursively
(define-public python2-htmlgen-gn ; guix obsolete
-(package
- (name "python2-htmlgen-gn")
- (version "2.2.2")
- (source (origin
- (method url-fetch)
- ;; http://files.genenetwork.org/software/contrib/htmlgen-2.2.2-gn.tar.gz
- (uri (string-append
- "http://ipfs.genenetwork.org/ipfs/QmZLWsPHLFTU3hWAfdTwj3RXFrS8Ma7KEixne1suWuYqeG/htmlgen-" version "-gn.tar.gz"))
- (sha256
- (base32
- "1lwsk56rymhrma46cbyh3g64ksmq1vsih3qkrc2vh0lpba825y7r"))
- ;;(patches (list
- ;; (search-patch "python2-htmlgen-Applied-Deb-patch.patch")
- ;; (search-patch "python2-htmlgen-Fix-test-for-random.patch")
- ))
- (build-system python-build-system)
- (outputs '("out"))
- (native-inputs
- `(("make" ,gnu-make)
- ))
- (propagated-inputs
- `(("python2" ,python-2)))
- (arguments
- `(#:phases (modify-phases %standard-phases
- (replace 'build
- (lambda _
- (system* "python2" "-m" "compileall" ".")))
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (include (string-append out "/include"))
- (lib2 (string-append out "/lib/htmlgen"))
- (lib (string-append (assoc-ref %outputs "out") "/lib/python2.7/site-packages/htmlgen"))
- (pkgconfig (string-append out "/lib/pkgconfig"))
- (doc (string-append out "/share/doc")))
- ;; Install libs and headers.
- ;; (copy-file "HTMLgen.pyc" "HTMLgen2.pyc")
- (install-file "HTMLgen.pyc" lib)
- (install-file "HTMLgen2.pyc" lib)
- (install-file "imgsize.pyc" lib)
- (install-file "ImageH.pyc" lib)
- (install-file "ImagePaletteH.pyc" lib)
- (install-file "__init__.pyc" lib)
- ))) ; install
- ) ; phases
- #:tests? #f))
- (home-page
- "https://packages.debian.org/unstable/python/python-htmlgen")
- (synopsis "Genenetwork version of Python2 HTMLgen (defunkt
-project)")
- (description #f)
- (license #f)))
+ (package
+ (name "python2-htmlgen-gn")
+ (version "2.2.2")
+ (source (origin
+ (method url-fetch)
+ ;; http://files.genenetwork.org/software/contrib/htmlgen-2.2.2-gn.tar.gz
+ (uri (string-append
+ "http://ipfs.genenetwork.org/ipfs/QmZLWsPHLFTU3hWAfdTwj3RXFrS8Ma7KEixne1suWuYqeG/htmlgen-" version "-gn.tar.gz"))
+ (sha256
+ (base32
+ "1lwsk56rymhrma46cbyh3g64ksmq1vsih3qkrc2vh0lpba825y7r"))
+ ;;(patches (list
+ ;; (search-patch "python2-htmlgen-Applied-Deb-patch.patch")
+ ;; (search-patch "python2-htmlgen-Fix-test-for-random.patch")
+ ))
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2
+ #:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'modernize-imports
+ (lambda _
+ (substitute* "HTMLgen.py"
+ (("whrandom") "random"))
+ (substitute* "HTMLcalendar.py"
+ (("import regex") "import re as regex"))
+ (substitute* "HTMLutil.py"
+ (("import string, regex") "import re as regex\nimport string"))
+ (substitute* "HTMLtest.py"
+ (("import string, regex, regsub") "import re as regex\nimport string")
+ (("regsub.split") "re.split"))
+ #t))
+ (replace 'build
+ (lambda _
+ (invoke "python" "-m" "compileall" ".")))
+ (replace 'check
+ (lambda* (#:key (tests? '()) #:allow-other-keys)
+ (if tests?
+ (invoke "python" "HTMLtest.py")
+ #t)))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (lib (string-append out "/lib/python2.7/site-packages/htmlgen/")))
+ ;; Install libs and headers.
+ (for-each (lambda (file)
+ (install-file file lib))
+ (find-files "." "\\.py[c]?$"))
+ #t))))))
+ (home-page "https://packages.debian.org/unstable/python/python-htmlgen")
+ (synopsis "Genenetwork version of Python2 HTMLgen (defunkt project)")
+ (description #f)
+ (license #f)))
(define-public python2-htmlgen-2.2
(package