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authorPjotr Prins2017-12-19 04:39:46 -0600
committerPjotr Prins2017-12-19 04:39:46 -0600
commit474524a5a0d57744c1727442b33d8f2889eb0397 (patch)
tree21718b00b74963756e97b069c6d4e3faf63093cf /gn/packages
parentc846b5ebbeb8d05134871d4b9d93beed327e43bc (diff)
downloadguix-bioinformatics-474524a5a0d57744c1727442b33d8f2889eb0397.tar.gz
OpenBlas
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/gemma.scm29
1 files changed, 14 insertions, 15 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index 1c95310..803d592 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -62,18 +62,19 @@
#:use-module (srfi srfi-1))
(define-public openblas-haswell
+ (let ((commit "893bd14e924fa72a4ed345a75d64c637f1b1c550"))
(package
(name "openblas-haswell")
- (version "0.2.20")
- (source
- (origin
- (method url-fetch)
- (uri (string-append "https://github.com/xianyi/OpenBLAS/tarball/v"
- version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "1bd03c5xni0bla0wg1wba841b36b0sg13sjja955kn5xzvy4i61a"))))
+ (version (string-append "0.2.20-git-" (string-take commit 7)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/xianyi/OpenBLAS.git")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "0qv03c2yq46p9sajc3a3f56ijfifyv6f4n51a81wc2hihy4ilcap"))))
(build-system gnu-build-system)
(arguments
@@ -98,7 +99,6 @@
"NO_WARMUP=0"
"GEMM_MULTITHREAD_THRESHOLD=4"
"USE_THREAD=1"
- "USE_THREAD=1"
"NO_AFFINITY=0"
"NO_LAPACK=0" ; use OpenBlas LAPACK
"COMMON_PROF=0" ; disable profiling
@@ -136,7 +136,7 @@
(synopsis "Platform optimized BLAS library based on GotoBLAS")
(description
"OpenBLAS is a BLAS library forked from the GotoBLAS2-1.13 BSD version.")
- (license license:bsd-3)))
+ (license license:bsd-3))))
(define-public gsl1 ; supporting older GSL tests
@@ -183,7 +183,7 @@ numbers.")
("eigen" ,eigen)
("shunit2" ,shunit2)
; ("lapack" ,lapack) - included in openblas-haswell
- ("openblas-haswell" ,openblas-haswell)
+ ("openblas" ,openblas-haswell)
("zlib" ,zlib)
))
(native-inputs ; for running tests
@@ -198,7 +198,6 @@ numbers.")
(string-append "EIGEN_INCLUDE_PATH="
(assoc-ref %build-inputs "eigen")
"/include/eigen3/")
- "fast-check"
)
#:phases
; "/include/eigen3/"
@@ -212,7 +211,7 @@ numbers.")
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(install-file "bin/gemma" (string-append out "/bin"))))))
- #:tests? #f
+ ; #:tests? #f
#:parallel-tests? #f))
(home-page "http://www.xzlab.org/software.html")
(synopsis "Tool for genome-wide efficient mixed model association")