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authorpjotrp2017-02-25 08:09:19 +0000
committerpjotrp2017-02-25 08:09:19 +0000
commit303c93c04c65a2dbf0c8ad8e27b5e6c849848d06 (patch)
treead2df7f2d585acc8718e5c3afddfd5b2e3fadd1d /gn/packages
parent2bef484b005f1fd18173ecde3da34bf9e67587f2 (diff)
downloadguix-bioinformatics-303c93c04c65a2dbf0c8ad8e27b5e6c849848d06.tar.gz
sambamba: patch main bin
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/sambamba.scm3
1 files changed, 2 insertions, 1 deletions
diff --git a/gn/packages/sambamba.scm b/gn/packages/sambamba.scm
index 221aeb6..6463689 100644
--- a/gn/packages/sambamba.scm
+++ b/gn/packages/sambamba.scm
@@ -87,7 +87,8 @@
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "sambamba/pileup.d"
(("string samtoolsBin = null;") (string-append "string samtoolsBin = \"" (which "samtools") "\";"))
- (("string bcftoolsBin = null;") (string-append "string bcftoolsBin = \"" (which "bcftools") "\";")))))
+ (("string samtoolsBin = null;") (string-append "string samtoolsBin = \"" (which "samtools") "\";"))
+ ((" this_app = args[0];") (string-append " this_app = \"" (which "sambamba") "\";")))))
(add-after 'unpack 'unpack-htslib-sources
(lambda* (#:key inputs #:allow-other-keys)
;; The current build compiles htslib statically into the