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authorEfraim Flashner2021-01-24 13:40:09 +0200
committerEfraim Flashner2021-01-24 13:40:09 +0200
commit4482bc32c6bba22aa4e27957410987c552dc2def (patch)
tree547238bc99c82327626287c2d7cfdaf3102aaf8f /gn/packages
parentfa6fd8f305a3a74cbdf2741a7195dd1c9a534ad1 (diff)
downloadguix-bioinformatics-4482bc32c6bba22aa4e27957410987c552dc2def.tar.gz
gn: bio-vcf upstreamed
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/ruby.scm26
1 files changed, 0 insertions, 26 deletions
diff --git a/gn/packages/ruby.scm b/gn/packages/ruby.scm
index 4aec059..8ad537a 100644
--- a/gn/packages/ruby.scm
+++ b/gn/packages/ruby.scm
@@ -95,32 +95,6 @@ a focus on simplicity and productivity.")
(home-page "https://ruby-lang.org")
(license license:ruby)))
-(define-public bio-vcf ; guix ready, minus tests not passing
- (package
- (name "bio-vcf")
- (version "0.9.4")
- (source
- (origin
- (method url-fetch)
- (uri (rubygems-uri "bio-vcf" version))
- (sha256
- (base32
- "1xpll1pnpr5jxjdyydfw79ydz6l6lfhy6fg2gys8s3my9vwaf3ld"))))
- (build-system ruby-build-system)
- (native-inputs
- `(("ruby-cucumber" ,ruby-cucumber)
- ("ruby-rake" ,ruby-rake)))
- (synopsis "Smart VCF parser DSL")
- (description
- "Bio-vcf provides a @acronym{DSL, domain specific language} for processing
-the VCF format. Record named fields can be queried with regular expressions.
-Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not
-only very fast for genome-wide (WGS) data, it also comes with a filtering,
-evaluation and rewrite language and can output any type of textual data,
-including VCF header and contents in RDF and JSON.")
- (home-page "http://github.com/vcflib/bio-vcf")
- (license license:expat)))
-
(define-public bio-table ; guix ready with tests
(package
(name "bio-table")