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authorEfraim Flashner2019-09-23 01:59:46 -0500
committerEfraim Flashner2019-09-23 01:59:46 -0500
commite4143ab02f03d6f765ca9cea800ee94df4e2e55e (patch)
tree202025199e4fc86fcce5c702061b0a62cfc3841f /gn/packages
parent385c7fa29c7c562d3d36fbb5e34e8881a0d53d55 (diff)
downloadguix-bioinformatics-e4143ab02f03d6f765ca9cea800ee94df4e2e55e.tar.gz
gn: genenetwork2: Use packaged javascript-colorbox.
* gn/packages/genenetwork.scm (genenetwork2)[inputs]: Add javascript-colorbox's source. [arguments]: Replace vendored javascript-colorbox with our own.
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/genenetwork.scm11
1 files changed, 10 insertions, 1 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 175ec69..7e5a04e 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -287,6 +287,8 @@ location of a putative QTL.")
("javascript-panzoom" ,javascript-cytoscape-panzoom)
("javascript-qtip" ,javascript-cytoscape-qtip)
))
+ (inputs
+ `(("javascript-colorbox" ,(package-source javascript-colorbox))))
(build-system python-build-system)
(arguments
`(#:python ,python-2
@@ -307,9 +309,16 @@ location of a putative QTL.")
(("git") (which "git"))
(("grep") (which "grep"))
(("rm") (which "rm"))
- (("which") (which "which")) ; three wiches in a row!
+ (("which") (which "which")) ; three whiches in a row!
)
#t))
+ (add-after 'unpack 'patch-javascript
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((colorbox (assoc-ref inputs "javascript-colorbox"))
+ (gn2 "/share/genenetwork2/javascript/"))
+ (delete-file-recursively "wqflask/wqflask/static/packages/colorbox")
+ (copy-recursively colorbox "wqflask/wqflask/static/packages/colorbox")
+ #t)))
(add-before 'install 'fix-paths
(lambda* (#:key inputs #:allow-other-keys)
(let* (