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authorPjotr Prins2016-02-18 18:04:14 +0100
committerPjotr Prins2016-02-18 18:04:14 +0100
commit6f755a05f049bba9a9438761641b4396dfec0d49 (patch)
treed4d03ae9b74e05eefd3e96c6b72be0fb7b7870fe /gn/packages
parenteb3d652afc40645db643a0b8df8a9598338ffea0 (diff)
parent5dbfda7d08ca718712a4c86bc3b7a6219843527a (diff)
downloadguix-bioinformatics-6f755a05f049bba9a9438761641b4396dfec0d49.tar.gz
Merge pull request #2 from roelj/master
Add rdmd
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/bioinformatics.scm41
1 files changed, 41 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 0c4436c..b7384ef 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -417,6 +417,45 @@ association studies (GWAS).")
(description "Genenetwork installation sumo.")
(license license:agpl3+))))
+(define-public rdmd
+ (package
+ (name "rdmd")
+ (version "20160217")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/D-Programming-Language/tools.git")
+ (commit "4dba6877c481c1a911a7d50714da8fbd80022f0e")))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "1pcx5lyqzrip86f4vv60x292rpvnwsq2hvl1znm9x9rn68f34m45"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'check)
+ (replace
+ 'build
+ (lambda* _
+ (zero? (system* "ldc2" "rdmd.d"))))
+ (replace
+ 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+ (mkdir-p bin)
+ (copy-file "rdmd" (string-append bin "/rdmd"))))))))
+ (native-inputs
+ `(("gcc" ,gcc)
+ ("ldc" ,ldc)))
+ (home-page "https://github.com/D-Programming-Language/tools/")
+ (synopsis "Extra tools for building D programs")
+ (description
+ "This repository hosts various tools redistributed with DMD or used
+internally during various build tasks.")
+ (license license:boost1.0)))
+
(define-public sambamba
(package
(name "sambamba")
@@ -442,6 +481,7 @@ association studies (GWAS).")
;;("phobos2-ldc" ,phobos2-ldc)
("lz4" ,lz4)
("gcc" ,gcc)
+ ("rdmd" ,rdmd)
("htslib-src"
,(origin
(method url-fetch)
@@ -502,6 +542,7 @@ markdup, and depth.")
version ".tar.gz"))
(sha256
(base32 ""))))
+ (build-system gnu-build-system)
(home-page "http://broadinstitute.github.io/picard/")
(synopsis "A set of Java command line tools for manipulating high-throughput
sequencing data (HTS) data and formats")