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authorpjotrp2017-10-23 16:32:00 +0000
committerpjotrp2017-10-23 16:32:00 +0000
commit3deb5c8f39442e39e774ce9c205d3946536c5367 (patch)
treeb8d82b3a7bbedccb4c7b55d52748a60fae5d5f27 /gn/packages
parent2267d0e7d9ce272c61f3eb8f4b548b8f4bff85e2 (diff)
downloadguix-bioinformatics-3deb5c8f39442e39e774ce9c205d3946536c5367.tar.gz
Renamed plink-ng package since it went into mainline
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/bioinformatics.scm4
-rw-r--r--gn/packages/genenetwork.scm4
2 files changed, 4 insertions, 4 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index dffa11e..56ff4ab 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -753,10 +753,10 @@ subsequent visualization, annotation and storage of results.")
;; LGPLv2.1+
(license (list license:gpl2 license:lgpl2.1+))))
-(define-public plink-ng
+(define-public plink-ng-gn
(let ((commit "5d1db4313ba0cc976562da233db4aced78975d10"))
(package
- (name "plink-ng")
+ (name "plink-ng-gn")
(version (string-append "1.90b3-" commit )) ; Aug 11, 2016
(source (origin
(method git-fetch)
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 5f119a7..514a85c 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -193,7 +193,7 @@ location of a putative QTL.")
("gemma-git-gn2" ,gemma-git-gn2)
("gemma-wrapper" ,gemma-wrapper)
("genenetwork2-files-small" ,genenetwork2-files-small)
- ("plink-ng" ,plink-ng)
+ ("plink-ng-gn" ,plink-ng-gn)
("pylmm-gn2" ,pylmm-gn2)
("nginx" ,nginx)
("python2-flask" ,python2-flask)
@@ -248,7 +248,7 @@ location of a putative QTL.")
(let* (
(datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" ))
(pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis"))
- (plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2"))
+ (plink2cmd (string-append (assoc-ref inputs "plink-ng-gn") "/bin/plink2"))
(gemmacmd (string-append (assoc-ref inputs "gemma-git-gn2") "/bin/gemma"))
)