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| author | pjotrp | 2017-05-17 09:39:13 +0000 |
|---|---|---|
| committer | pjotrp | 2017-05-17 09:39:13 +0000 |
| commit | a0f4e5a7279625ecd8391f5412e54158bee51dd1 (patch) | |
| tree | 710a8d36196e0acee451426ea885d08cb218f771 /gn/packages | |
| parent | 0e79fde97071b8ab0d189a158a6092edd09670ff (diff) | |
| download | guix-bioinformatics-a0f4e5a7279625ecd8391f5412e54158bee51dd1.tar.gz | |
Adding stable gemma package
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/gemma.scm | 39 |
1 files changed, 38 insertions, 1 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index 35ed294..6cd8388 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -95,7 +95,7 @@ (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) (install-file "bin/gemma" (string-append out "/bin")))))) - #:tests? #f)) + #:tests? #t)) (home-page "") (synopsis "Tool for genome-wide efficient mixed model association") (description "GEMMA is the software implementing the Genome-wide @@ -103,3 +103,40 @@ Efficient Mixed Model Association algorithm for a standard linear mixed model and some of its close relatives for genome-wide association studies (GWAS).") (license license:gpl3)))) + +(define-public gemma + (package + (name "gemma") + (version "0.95a") ; this build fails + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/xiangzhou/GEMMA/archive/v" + version ".tar.gz")) + (sha256 + (base32 + "1h0fqs45gy0n1nr76pzzagrv1cbcp7zaz34ljqb09jljc7c3lw9p")))) + (inputs `(("gsl" ,gsl) + ("lapack" ,lapack) + ("zlib" ,zlib))) + (build-system gnu-build-system) + (arguments + `(#:make-flags '("FORCE_DYNAMIC=1") + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-before 'build 'bin-mkdir + (lambda _ + (mkdir-p "bin") + )) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (install-file "bin/gemma" (string-append out "/bin")))))) + #:tests? #f)) ; no tests included + (home-page "") + (synopsis "Tool for genome-wide efficient mixed model association") + (description "GEMMA is software implementing the Genome-wide +Efficient Mixed Model Association algorithm for a standard linear +mixed model and some of its close relatives for genome-wide +association studies (GWAS).") + (license license:gpl3))) |