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authorEfraim Flashner2019-08-29 09:31:07 -0500
committerEfraim Flashner2019-08-29 09:31:07 -0500
commit8ee6f7dd7acbe71bbe62807c9006d192410a7bd4 (patch)
tree1362378ef56a86c9ddd6a116caae1e6de012a219 /gn/packages
parent5482718d1996fed14d8c73829837380715ccd725 (diff)
downloadguix-bioinformatics-8ee6f7dd7acbe71bbe62807c9006d192410a7bd4.tar.gz
gn: Add more crates
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/crates-io.scm341
1 files changed, 336 insertions, 5 deletions
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm
index 37cbf33..d4ecbc5 100644
--- a/gn/packages/crates-io.scm
+++ b/gn/packages/crates-io.scm
@@ -264,6 +264,40 @@
`(#:cargo-inputs
(("rust-winapi" ,rust-winapi))))))
+(define-public rust-argon2rs
+ (package
+ (name "rust-argon2rs")
+ (version "0.2.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "argon2rs" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "14mkgkrjd4b4zy92pflz6yb4j1wn2chbd8jczxknxbkdm2vb0rrz"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs
+ (("rust-blake2-rfc" ,rust-blake2-rfc)
+ ("rust-scoped-threadpool" ,rust-scoped-threadpool))
+ #:cargo-development-inputs
+ (("rust-cargon" ,rust-cargon))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-Cargo-toml
+ (lambda _
+ (substitute* "Cargo.toml"
+ (("path = \"benches/cargon\",") ""))
+ #t)))))
+ (home-page "https://github.com/bryant/argon2rs")
+ (synopsis "Rust library for the Argon2 hashing algorithm")
+ (description
+ "This is a purely Rust-based library that provides both variants of the
+state-of-the-art Argon2 hashing algorithm, suitable for password hashing and
+password-based key derivation.")
+ (license license:expat)))
+
(define-public rust-arrayvec
(package
(name "rust-arrayvec")
@@ -696,6 +730,35 @@
(license (list license:asl2.0
license:expat))))
+(define-public rust-blake2-rfc
+ (package
+ (name "rust-blake2-rfc")
+ (version "0.2.18")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "blake2-rfc" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0034g47hyq2bzmk40895ill1mbnpmmjakdq3dmm9clidvl5m6vax"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs
+ (("rust-arrayvec" ,rust-arrayvec)
+ ("rust-constant-time-eq" ,rust-constant-time-eq)
+ ("rust-clippy" ,rust-clippy))
+ #:cargo-development-inputs
+ (("rust-data-encoding" ,rust-data-encoding))))
+ (home-page "https://github.com/cesarb/blake2-rfc")
+ (synopsis "pure Rust implementation of BLAKE2 based on RFC 7693")
+ (description
+ "This is a pure Rust implementation of BLAKE2 based on RFC 7693. This
+crate is limited to the features described in the RFC: only the @code{digest
+length} and @code{key length} parameters can be used.")
+ (license (list license:asl2.0
+ license:expat))))
+
(define-public rust-blas-src
(package
(name "rust-blas-src")
@@ -906,6 +969,29 @@
(license (list license:asl2.0
license:expat))))
+(define-public rust-cargon
+ (package
+ (name "rust-cargon")
+ (version "0.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "cargon" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1cszlab7jk736p0lb50ag4l9nv72m7j41bwrmygl0lr4iz0350w2"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs
+ (("rust-gcc" ,rust-gcc))))
+ (home-page "https://github.com/bryant/argon2rs")
+ (synopsis "Thin wrapper around the Argon2 C library")
+ (description
+ "This package provides a thin wrapper around the Argon2 C library. It is
+used in argon2rs' bench suite.")
+ (license license:wtfpl2)))
+
(define-public rust-cc
(package
(name "rust-cc")
@@ -1099,7 +1185,7 @@
("rust-textwrap" ,rust-textwrap)
("rust-unicode-width" ,rust-unicode-width)
("rust-vec-map" ,rust-vec-map)
- ("rust-yaml-rust" ,rust-yaml-rust))
+ ("rust-yaml-rust" ,rust-yaml-rust-0.3))
#:cargo-development-inputs
(("rust-lazy-static" ,rust-lazy-static)
("rust-regex" ,rust-regex)
@@ -1190,6 +1276,45 @@
(license (list license:asl2.0
license:expat))))
+(define-public rust-compiletest-rs
+ (package
+ (name "rust-compiletest-rs")
+ (version "0.3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "compiletest-rs" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0rvckrzk4bs3h9vsvf0z8rzhh59rddxcq5z5c0iyzv1daihci5sq"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs
+ (("rust-diff" ,rust-diff)
+ ("rust-filetime" ,rust-filetime)
+ ("rust-getopts" ,rust-getopts)
+ ("rust-libc" ,rust-libc)
+ ("rust-log" ,rust-log)
+ ("rust-miow" ,rust-miow)
+ ("rust-regex" ,rust-regex)
+ ("rust-rustfix" ,rust-rustfix)
+ ("rust-serde" ,rust-serde)
+ ("rust-serde-derive" ,rust-serde-derive)
+ ("rust-serde-json" ,rust-serde-json)
+ ("rust-winapi" ,rust-winapi)
+ ("rust-tempfile" ,rust-tempfile)
+ ("rust-tester" ,rust-tester))))
+ (home-page "https://github.com/laumann/compiletest-rs")
+ (synopsis "Compiletest utility from the Rust compiler")
+ (description
+ "This project is an attempt at extracting the @code{compiletest} utility
+from the Rust compiler. The @code{compiletest} utility is useful for library
+and plugin developers, who want to include test programs that should fail to
+compile, issue warnings or otherwise produce compile-time output.")
+ (license (list license:asl2.0
+ license:expat))))
+
(define-public rust-console
(package
(name "rust-console")
@@ -1225,6 +1350,26 @@
"This package provides a terminal and console abstraction for Rust")
(license license:expat)))
+(define-public rust-constant-time-eq
+ (package
+ (name "rust-constant-time-eq")
+ (version "0.1.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "constant_time_eq" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "083icpr9xb72rrdxw3p4068dcspn6ai22jy7rhl2a8grfz448nlr"))))
+ (build-system cargo-build-system)
+ (home-page "https://github.com/cesarb/constant_time_eq")
+ (synopsis" Compares two equal-sized byte strings in constant time")
+ (description
+ "This package compares two equal-sized byte strings in constant time.
+It is inspired by the Linux kernel's crypto_memneq.")
+ (license license:cc0)))
+
(define-public rust-conv
(package
(name "rust-conv")
@@ -2036,6 +2181,36 @@
(license (list license:unlicense
license:expat))))
+(define-public rust-duct
+ (package
+ (name "rust-duct")
+ (version "0.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "duct" version))
+ (file-name
+ (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1vm1nzyi434h2zwix7c925qfa886ri1qx4nkq4hdrgkq7h9ayh1n"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs
+ (("rust-lazycell" ,rust-lazycell)
+ ("rust-libc" ,rust-libc)
+ ("rust-os-pipe" ,rust-os-pipe)
+ ("rust-shared-child" ,rust-shared-child))
+ #:cargo-development-inputs
+ (("rust-tempdir" ,rust-tempdir))))
+ (home-page
+ "https://github.com/oconnor663/duct.rs")
+ (synopsis
+ "a library for creating shell pipelines")
+ (description
+ "a library for creating shell pipelines")
+ (license license:expat)))
+
(define-public rust-either
(package
(name "rust-either")
@@ -2557,6 +2732,42 @@
(license (list license:asl2.0
license:expat))))
+(define-public rust-rustfix
+ (package
+ (name "rust-rustfix")
+ (version "0.4.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "rustfix" version))
+ (file-name
+ (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "01zn0ysnass3mmrhxk90584y713vjfq1x97mi4saac99g9vsql3i"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs
+ (("rust-failure" ,rust-failure)
+ ("rust-log" ,rust-log)
+ ("rust-serde" ,rust-serde)
+ ("rust-serde-json" ,rust-serde-json))
+ #:cargo-development-inputs
+ (("rust-difference" ,rust-difference)
+ ("rust-duct" ,rust-duct)
+ ("rust-env-logger" ,rust-env-logger)
+ ("rust-log" ,rust-log)
+ ("rust-proptest" ,rust-proptest)
+ ("rust-tempdir" ,rust-tempdir))))
+ (home-page
+ "https://github.com/rust-lang-nursery/rustfix")
+ (synopsis
+ "Automatically apply the suggestions made by rustc")
+ (description
+ "Automatically apply the suggestions made by rustc")
+ (license (list license:asl2.0
+ license:expat))))
+
(define-public rust-flame
(package
(name "rust-flame")
@@ -3093,6 +3304,35 @@
(license (list license:asl2.0
license:expat))))
+(define-public rust-gcc
+ (package
+ (name "rust-gcc")
+ (version "0.3.55")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "gcc" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1hng1sajn4r67hndvhjysswz8niayjwvcj42zphpxzhbz89kjpwg"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs
+ (("rust-rayon" ,rust-rayon-0.8))
+ #:cargo-development-inputs
+ (("rust-tempdir" ,rust-tempdir))
+ ;#:tests? #f
+ )) ; tests fail
+ (home-page "https://github.com/alexcrichton/gcc-rs")
+ (synopsis "Library to compile C/C++ code into a Rust library/application")
+ (description
+ "This package provides a build-time dependency for Cargo build scripts to
+assist in invoking the native C compiler to compile native C code into a static
+archive to be linked into Rustcode.")
+ (license (list license:asl2.0
+ license:expat))))
+
(define-public rust-generic-array
(package
(name "rust-generic-array")
@@ -4696,6 +4936,25 @@
(license (list license:asl2.0
license:expat))))
+(define-public rust-linked-hash-map-0.3
+ (package
+ (inherit rust-linked-hash-map)
+ (name "rust-linked-hash-map")
+ (version "0.3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "linked-hash-map" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1kaf95grvfqchxn8pl0854g8ab0fzl56217hndhhhz5qqm2j09kd"))))
+ (arguments
+ `(#:cargo-inputs
+ (("rust-clippy" ,rust-clippy)
+ ("rust-serde" ,rust-serde-0.8)
+ ("rust-serde-test" ,rust-serde-test)))))) ; 0.8
+
(define-public rust-lipsum
(package
(name "rust-lipsum")
@@ -7281,6 +7540,29 @@ invocations.")
("rust-serde" ,rust-serde)
("rust-serde-derive" ,rust-serde-derive))))))
+(define-public rust-rayon-0.8
+ (package
+ (inherit rust-rayon)
+ (name "rust-rayon")
+ (version "0.8.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "rayon" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1j2l9x98ma63qkh9w8zik0vcpwqf9cvc2ynh66ibjp36nq4gw55n"))))
+ (arguments
+ `(#:cargo-inputs
+ (("rust-rayon-core" ,rust-rayon-core))
+ #:cargo-development-inputs
+ (("rust-compiletest-rs" ,rust-compiletest-rs)
+ ("rust-docopt" ,rust-docopt)
+ ("rust-futures" ,rust-futures)
+ ("rust-rand" ,rust-rand-0.3)
+ ("rust-rustc-serialize" ,rust-rustc-serialize))))))
+
(define-public rust-rayon-core
(package
(name "rust-rayon-core")
@@ -7356,6 +7638,8 @@ invocations.")
`(#:cargo-inputs
(("rust-rand-core" ,rust-rand-core-0.3))))))
+;; This package requires features which are unavailable
+;; on the stable releases of Rust.
(define-public rust-redox-syscall ; guix upstreamable
(package
(name "rust-redox-syscall")
@@ -7373,6 +7657,7 @@ invocations.")
(synopsis "Rust library to access raw Redox system calls")
(description "This package provides a Rust library to access raw Redox
system calls.")
+ (properties '((hidden? . #t)))
(license license:expat)))
(define-public rust-redox-users
@@ -7401,7 +7686,7 @@ system calls.")
"A Rust library to access Redox users and groups functionality")
(description
"This package provides a Rust library to access Redox users and groups functionality")
- (license #f)))
+ (license license:expat)))
(define-public rust-ref-cast
(package
@@ -7837,6 +8122,34 @@ system calls.")
(license (list license:asl2.0
license:boost1.0))))
+(define-public rust-scoped-threadpool
+ (package
+ (name "rust-scoped-threadpool")
+ (version "0.1.9")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "scoped_threadpool" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1a26d3lk40s9mrf4imhbik7caahmw2jryhhb6vqv6fplbbgzal8x"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-development-inputs
+ (("rust-lazy-static" ,rust-lazy-static))))
+ (home-page "https://github.com/Kimundi/scoped-threadpool-rs")
+ (synopsis "library for scoped and cached threadpools")
+ (description
+ "This crate provides a stable, safe and scoped threadpool. It can be used
+to execute a number of short-lived jobs in parallel without the need to respawn
+the underlying threads. Jobs are runnable by borrowing the pool for a given
+scope, during which an arbitrary number of them can be executed. These jobs can
+access data of any lifetime outside of the pools scope, which allows working on
+non-'static references in parallel.")
+ (license (list license:asl2.0
+ license:expat))))
+
(define-public rust-scroll
(package
(name "rust-scroll")
@@ -9147,7 +9460,7 @@ function with proven statistical guarantees.")
(define-public rust-term-size
(package
(name "rust-term-size")
- (version "1.0.0-beta1")
+ (version "0.3.1")
(source
(origin
(method url-fetch)
@@ -9156,12 +9469,12 @@ function with proven statistical guarantees.")
(string-append name "-" version ".tar.gz"))
(sha256
(base32
- "13w9cqjhzh3mmx6zami8lxyf42xx53yy866zxhxqcm71k637v8d8"))))
+ "09wk3173ngmb710qs9rwgibq4w250q8lgnwjvb9cypc1vdk9lnwy"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-clippy" ,rust-clippy)
- ;("rust-kernel32-sys" ,rust-kernel32-sys) ; windows
+ ("rust-kernel32-sys" ,rust-kernel32-sys)
("rust-libc" ,rust-libc)
("rust-winapi" ,rust-winapi))))
(home-page
@@ -11111,3 +11424,21 @@ in-memory encoding/decoding.")
"The missing YAML 1.2 parser for rust")
(license (list license:asl2.0
license:expat))))
+
+(define-public rust-yaml-rust-0.3
+ (package
+ (inherit rust-yaml-rust)
+ (name "rust-yaml-rust")
+ (version "0.3.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "yaml-rust" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "14m9dzwb8fb05f4jjb4nqp49rxd9c5vcmwpv3a04d2y5iphncqz6"))))
+ (arguments
+ `(#:cargo-inputs
+ (("rust-clippy" ,rust-clippy)
+ ("rust-linked-hash-map" ,rust-linked-hash-map-0.3))))))