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authorPjotr Prins2016-01-21 03:57:45 -0500
committerPjotr Prins2016-01-21 03:57:45 -0500
commit14b9c21307f286363b17e898ae85bb8c9f1547f0 (patch)
tree48e6491a7fc914076f27d50584f032222170d193 /gn/packages
parent0cf828b6c286690d04708b7f317712e0b473dbf8 (diff)
downloadguix-bioinformatics-14b9c21307f286363b17e898ae85bb8c9f1547f0.tar.gz
Adding to genenetwork install
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/bioinformatics.scm21
1 files changed, 14 insertions, 7 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 6dd2fc9..9ca4fc1 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -16,6 +16,7 @@
#:use-module (gnu packages)
#:use-module (gnu packages algebra)
#:use-module (gnu packages base)
+ #:use-module (gnu packages bioinformatics)
#:use-module (gnu packages boost)
#:use-module (gnu packages compression)
#:use-module (gnu packages cpio)
@@ -119,11 +120,11 @@
(license license:gpl2+)))
-(define-public genenetwork
- (let ((commit "860bdcebde5cbb1898c26da80ac67207480c0803"))
+(define-public genenetwork2
+ (let ((commit "9e9475053"))
(package
- (name "genenetwork")
- (version (string-append "2.0.alpha." commit))
+ (name "genenetwork2")
+ (version (string-append "2.0." commit))
(source (origin
(method git-fetch)
(uri (git-reference
@@ -132,10 +133,16 @@
(commit commit)))
(sha256
(base32
- "0k6i9h3j0vgx00qn0xnah0g52pzwq6wwxvsv1bd1b1mar5p9x11j"))))
+ "1rzm0m596g2lh8vszfla2dz52frdzfhp0az7mrx2axmfqad90ywl"))))
(inputs `(("nginx" ,nginx)
- ("python" ,python-2
- )))
+ ("python-setuptools" ,python2-setuptools)
+ ("python-scipy" ,python2-scipy)
+ ("python-numpy" ,python2-numpy)
+ ("python-pandas" ,python2-pandas)
+ ("python" ,python-2) ;; probably superfluous
+ ("plink" ,plink) ;; probably superfluous
+ ("r-qtl" ,r-qtl)
+ ))
(build-system python-build-system)
(arguments
`(#:python ,python-2