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| author | Efraim Flashner | 2023-09-24 13:50:14 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2023-09-24 13:50:14 +0300 |
| commit | ac6c844f497f9e52887336a35542483053df6ce7 (patch) | |
| tree | d81e4a01540d52433524cf7e00c383ce86c76571 /gn/packages | |
| parent | a295df1e9e233df66e4e70b55af01909c5cc9b06 (diff) | |
| download | guix-bioinformatics-ac6c844f497f9e52887336a35542483053df6ce7.tar.gz | |
smoothxg: Link with odgi
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index c833e6a..c2a2e09 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1713,11 +1713,14 @@ dictionaries to record a queryable version of the graph.") (("\".*libsdsl\\.a\"") "\"-lsdsl\"") (("\".*libdivsufsort\\.a\"") "\"-ldivsufsort\"") (("\".*libdivsufsort64\\.a\"") "\"-ldivsufsort64\"") + (("\".*libodgi\\.a\"") "\"-lodgi\"") (("\\$\\{sdsl-lite_INCLUDE\\}") (search-input-directory inputs "/include/sdsl")) (("\\$\\{sdsl-lite-divsufsort_INCLUDE\\}") (dirname - (search-input-file inputs "/include/divsufsort.h")))))) + (search-input-file inputs "/include/divsufsort.h"))) + (("\\$\\{odgi_INCLUDE\\}") + (search-input-directory inputs "/include/odgi"))))) (add-before 'build 'build-abPOA (lambda* (#:key make-flags #:allow-other-keys) ;; This helps with portability to other architectures. @@ -1729,6 +1732,7 @@ dictionaries to record a queryable version of the graph.") (inputs (list jemalloc libdivsufsort + odgi openmpi pybind11 python |