diff options
| author | pjotrp | 2016-04-05 12:40:07 +0000 |
|---|---|---|
| committer | pjotrp | 2016-04-05 12:40:07 +0000 |
| commit | 62178e96a5c325c7473c1000953b2443b05f8687 (patch) | |
| tree | dccf9052e75430a18730fde1d10bab2baea0b814 /gn/packages | |
| parent | b11617ca00b2bd6b875770076141352accf65551 (diff) | |
| download | guix-bioinformatics-62178e96a5c325c7473c1000953b2443b05f8687.tar.gz | |
Added bio-table and bio-vcf gems
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/ruby.scm | 55 |
1 files changed, 55 insertions, 0 deletions
diff --git a/gn/packages/ruby.scm b/gn/packages/ruby.scm index bebc678..93f4628 100644 --- a/gn/packages/ruby.scm +++ b/gn/packages/ruby.scm @@ -27,6 +27,7 @@ #:use-module (gnu packages libffi) #:use-module (gnu packages python) #:use-module (gnu packages ragel) + #:use-module (gnu packages ruby) #:use-module (gnu packages tls) #:use-module (gnu packages version-control) #:use-module (guix packages) @@ -94,3 +95,57 @@ build process and its dependencies, whereas Make uses Makefile format.") a focus on simplicity and productivity.") (home-page "https://ruby-lang.org") (license license:ruby))) + +(define-public bio-vcf + (package + (name "bio-vcf") + (version "0.9.2") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "bio-vcf" version)) + (sha256 + (base32 + "1007bn0w8l11q867lxsyqnk0vgvv12skvk9gyglv7g44knr5vh4j")))) + (build-system ruby-build-system) + (arguments + `(#:tests? #f ; There are no tests. + )) + (synopsis + "Smart lazy multi-threaded parser for VCF format with useful +filtering and output rewriting (JSON, RDF etc.)") + (description + "Smart lazy multi-threaded parser for VCF format with useful +filtering and output rewriting (JSON, RDF etc.)") + (home-page + "http://github.com/pjotrp/bioruby-vcf") + (license expat))) + +(define-public bio-table + (package + (name "bio-table") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "bio-table" version)) + (sha256 + (base32 + "1jlpls734kd41rffn2y2747nr14k5rwgaj2g3k48i9xgsfcmrn6r")))) + (build-system ruby-build-system) + (arguments + `(#:tests? #f ; There are no tests. + )) + (propagated-inputs + `(("ruby-bio-logger" ,ruby-bio-logger))) + (synopsis + "Functions and tools for tranforming and changing tab delimited +and comma separated table files - useful for Excel sheets and SQL/RDF +output") + (description + "Functions and tools for tranforming and changing tab delimited +and comma separated table files - useful for Excel sheets and SQL/RDF +output") + (home-page + "http://github.com/pjotrp/bioruby-table") + (license expat))) |