diff options
author | Efraim Flashner | 2020-01-03 07:41:42 -0600 |
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committer | Efraim Flashner | 2020-01-03 07:41:42 -0600 |
commit | 44c7adcc1e9dbd006be0e2892bba3903fb40fc6e (patch) | |
tree | cfb58cc841a5918b584263e69accf36989c13744 /gn/packages | |
parent | d76e6c198cbed3b5ceaa4eb21c539e22be9f3861 (diff) | |
download | guix-bioinformatics-44c7adcc1e9dbd006be0e2892bba3903fb40fc6e.tar.gz |
gn: update jupyterhub, the-littlest-jupyterhub
Diffstat (limited to 'gn/packages')
-rw-r--r-- | gn/packages/jupyterhub.scm | 62 |
1 files changed, 40 insertions, 22 deletions
diff --git a/gn/packages/jupyterhub.scm b/gn/packages/jupyterhub.scm index 782157d..5b69b5b 100644 --- a/gn/packages/jupyterhub.scm +++ b/gn/packages/jupyterhub.scm @@ -17,7 +17,7 @@ #:use-module (gnu packages python-xyz) #:use-module (gnu packages serialization) #:use-module (gnu packages time) - ) + #:use-module (gn packages node)) (define-public jupyterhub (package @@ -29,30 +29,46 @@ (uri (pypi-uri "jupyterhub" version)) (sha256 (base32 - "0zx6gw9yhgki05j21p6x1x2sf5a2mg2c2mx0ii8rl6q4b98ilm1k")))) + "0zx6gw9yhgki05j21p6x1x2sf5a2mg2c2mx0ii8rl6q4b98ilm1k")) + (patches + (list + (origin + (method url-fetch) + (uri "https://github.com/jupyterhub/jupyterhub/commit/b624116be79168f37af728195af663498f3c55c0.patch") + (file-name "jupyterhub-fix-first-launch-errors.patch") + (sha256 + (base32 + "00rbqz0rz2642ypfgpd49fv7wzpc9n0pdfqixqp3zxs6vqf3x372"))))))) (build-system python-build-system) (arguments '(#:tests? #f ; Tests require a webserver, postgresql database and npm. #:phases (modify-phases %standard-phases (replace 'check - (lambda* (#:key tests? #:allow-other-keys) + (lambda* (#:key tests? inputs #:allow-other-keys) (if tests? - (;; From .travis.yml - (invoke "initdb" "main") - (invoke "pg_ctl" "-D" "main" "start") - (invoke "psql" "--list") - ;; From ci/init-db.sh - (invoke "psql" "-d" "postgres" "-c" - "CREATE DATABASE jupyterhub_upgrade_072;") - (invoke "psql" "-d" "postgres" "-c" - "CREATE DATABASE jupyterhub_upgrade_081;") - (invoke "psql" "-d" "postgres" "-c" - "CREATE DATABASE jupyterhub_upgrade_094;") - (invoke "pytest" "-v" "--maxfail=2" "jupyterhub/tests")) + ((let* ((postgres (assoc-ref inputs "postgresql")) + (initdb (string-append postgres "/bin/initdb")) + (pg_ctl (string-append postgres "/bin/pg_ctl")) + (psql (string-append postgres "/bin/psql")) + ) + ;; From .travis.yml + (invoke initdb "main") + (invoke pg_ctl "-D" "main" "start") + (invoke psql "--list") + ;; From ci/init-db.sh + (invoke psql "-d" "postgres" "-c" + "CREATE DATABASE jupyterhub_upgrade_072;") + (invoke psql "-d" "postgres" "-c" + "CREATE DATABASE jupyterhub_upgrade_081;") + (invoke psql "-d" "postgres" "-c" + "CREATE DATABASE jupyterhub_upgrade_094;") + (invoke "pytest" "-v" "--maxfail=2" "jupyterhub/tests")) + ) #t)))))) (propagated-inputs - `(("python-alembic" ,python-alembic) + `(;("node-configurable-http-proxy" ,node-configurable-http-proxy) + ("python-alembic" ,python-alembic) ("python-async-generator" ,python-async-generator) ("python-certipy" ,python-certipy) ("python-dateutil" ,python-dateutil) @@ -64,11 +80,13 @@ ("python-requests" ,python-requests) ("python-sqlalchemy" ,python-sqlalchemy) ("python-tornado" ,python-tornado) - ("python-traitlets" ,python-traitlets))) + ("python-traitlets" ,python-traitlets) + ;; Recommended but not required: + ("python-pycurl" ,python-pycurl))) (native-inputs `( - ;("postgresql" ,postgresql) - ;("python-psycopg2" ,python-psycopg2) + ("postgresql" ,postgresql) + ("python-psycopg2" ,python-psycopg2) ("python-beautifulsoup4" ,python-beautifulsoup4) ("python-jupyter-client" ,python-jupyter-client) @@ -86,8 +104,8 @@ proxies multiple instances of the single-user Jupyter notebook server.") (license license:bsd-3))) (define-public the-littlest-jupyterhub - (let ((commit "770b95027951c1e191690b0f65d3e2e2d72ba05f") ; Oct 30, 2019 - (revision "1")) + (let ((commit "29e8bcc4865d26ef67910862a567f55f46f96593") ; Dec 6, 2019 + (revision "2")) (package (name "the-littlest-jupyterhub") (version (git-version "0.0.0" revision commit)) @@ -100,7 +118,7 @@ proxies multiple instances of the single-user Jupyter notebook server.") (file-name (git-file-name name version)) (sha256 (base32 - "0dnin2rwrqr8nzf7gj6sjqchvdi24kd0sgjh655c4zq1hdbpsmc6")))) + "10xrmia8w9vd9zmgww426kyd95jx81l5c4zpq84gqbvkibq61rsa")))) (build-system python-build-system) (arguments '(#:phases |