diff options
| author | Efraim Flashner | 2022-06-07 12:08:23 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2022-06-07 12:08:23 +0300 |
| commit | 6b0bae3509e84968840de005dc31d25fb1525255 (patch) | |
| tree | 01f63adf73740780104c312fe1b54dc16fffc5b8 /gn/packages | |
| parent | 921d419d9b235b13c4216d7559fb15cd1b5327fd (diff) | |
| download | guix-bioinformatics-6b0bae3509e84968840de005dc31d25fb1525255.tar.gz | |
gn: pplacer-scripts: Update argument field.
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 23 |
1 files changed, 11 insertions, 12 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 178395a..130be16 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -2776,24 +2776,23 @@ downstream analysis.") #:phases (modify-phases %standard-phases (add-after 'unpack 'enter-scripts-dir - (lambda _ (chdir "scripts") #t)) + (lambda _ (chdir "scripts"))) (replace 'check - (lambda _ (invoke "python" "-m" "unittest" "discover" "-v") #t)) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "unittest" "discover" "-v")))) (add-after 'install 'wrap-executables (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin"))) - (let ((path (string-append + (bin (string-append out "/bin")) + (path (string-append (assoc-ref inputs "hmmer") "/bin:" (assoc-ref inputs "infernal") "/bin"))) - (display path) - (wrap-program (string-append bin "/refpkg_align.py") - `("PATH" ":" prefix (,path)))) - (let ((path (string-append - (assoc-ref inputs "hmmer") "/bin"))) - (wrap-program (string-append bin "/hrefpkg_query.py") - `("PATH" ":" prefix (,path))))) - #t))))) + (display path) + (wrap-program (string-append bin "/refpkg_align.py") + `("PATH" ":" prefix (,path))) + (wrap-program (string-append bin "/hrefpkg_query.py") + `("PATH" ":" prefix (,path))))))))) (inputs `(("infernal" ,infernal) ("hmmer" ,hmmer))) |