diff options
author | Efraim Flashner | 2019-08-29 09:31:07 -0500 |
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committer | Efraim Flashner | 2019-08-29 09:31:07 -0500 |
commit | 8ee6f7dd7acbe71bbe62807c9006d192410a7bd4 (patch) | |
tree | 1362378ef56a86c9ddd6a116caae1e6de012a219 /gn/packages | |
parent | 5482718d1996fed14d8c73829837380715ccd725 (diff) | |
download | guix-bioinformatics-8ee6f7dd7acbe71bbe62807c9006d192410a7bd4.tar.gz |
gn: Add more crates
Diffstat (limited to 'gn/packages')
-rw-r--r-- | gn/packages/crates-io.scm | 341 |
1 files changed, 336 insertions, 5 deletions
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm index 37cbf33..d4ecbc5 100644 --- a/gn/packages/crates-io.scm +++ b/gn/packages/crates-io.scm @@ -264,6 +264,40 @@ `(#:cargo-inputs (("rust-winapi" ,rust-winapi)))))) +(define-public rust-argon2rs + (package + (name "rust-argon2rs") + (version "0.2.5") + (source + (origin + (method url-fetch) + (uri (crate-uri "argon2rs" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "14mkgkrjd4b4zy92pflz6yb4j1wn2chbd8jczxknxbkdm2vb0rrz")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-blake2-rfc" ,rust-blake2-rfc) + ("rust-scoped-threadpool" ,rust-scoped-threadpool)) + #:cargo-development-inputs + (("rust-cargon" ,rust-cargon)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-Cargo-toml + (lambda _ + (substitute* "Cargo.toml" + (("path = \"benches/cargon\",") "")) + #t))))) + (home-page "https://github.com/bryant/argon2rs") + (synopsis "Rust library for the Argon2 hashing algorithm") + (description + "This is a purely Rust-based library that provides both variants of the +state-of-the-art Argon2 hashing algorithm, suitable for password hashing and +password-based key derivation.") + (license license:expat))) + (define-public rust-arrayvec (package (name "rust-arrayvec") @@ -696,6 +730,35 @@ (license (list license:asl2.0 license:expat)))) +(define-public rust-blake2-rfc + (package + (name "rust-blake2-rfc") + (version "0.2.18") + (source + (origin + (method url-fetch) + (uri (crate-uri "blake2-rfc" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0034g47hyq2bzmk40895ill1mbnpmmjakdq3dmm9clidvl5m6vax")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-arrayvec" ,rust-arrayvec) + ("rust-constant-time-eq" ,rust-constant-time-eq) + ("rust-clippy" ,rust-clippy)) + #:cargo-development-inputs + (("rust-data-encoding" ,rust-data-encoding)))) + (home-page "https://github.com/cesarb/blake2-rfc") + (synopsis "pure Rust implementation of BLAKE2 based on RFC 7693") + (description + "This is a pure Rust implementation of BLAKE2 based on RFC 7693. This +crate is limited to the features described in the RFC: only the @code{digest +length} and @code{key length} parameters can be used.") + (license (list license:asl2.0 + license:expat)))) + (define-public rust-blas-src (package (name "rust-blas-src") @@ -906,6 +969,29 @@ (license (list license:asl2.0 license:expat)))) +(define-public rust-cargon + (package + (name "rust-cargon") + (version "0.0.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "cargon" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1cszlab7jk736p0lb50ag4l9nv72m7j41bwrmygl0lr4iz0350w2")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-gcc" ,rust-gcc)))) + (home-page "https://github.com/bryant/argon2rs") + (synopsis "Thin wrapper around the Argon2 C library") + (description + "This package provides a thin wrapper around the Argon2 C library. It is +used in argon2rs' bench suite.") + (license license:wtfpl2))) + (define-public rust-cc (package (name "rust-cc") @@ -1099,7 +1185,7 @@ ("rust-textwrap" ,rust-textwrap) ("rust-unicode-width" ,rust-unicode-width) ("rust-vec-map" ,rust-vec-map) - ("rust-yaml-rust" ,rust-yaml-rust)) + ("rust-yaml-rust" ,rust-yaml-rust-0.3)) #:cargo-development-inputs (("rust-lazy-static" ,rust-lazy-static) ("rust-regex" ,rust-regex) @@ -1190,6 +1276,45 @@ (license (list license:asl2.0 license:expat)))) +(define-public rust-compiletest-rs + (package + (name "rust-compiletest-rs") + (version "0.3.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "compiletest-rs" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0rvckrzk4bs3h9vsvf0z8rzhh59rddxcq5z5c0iyzv1daihci5sq")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-diff" ,rust-diff) + ("rust-filetime" ,rust-filetime) + ("rust-getopts" ,rust-getopts) + ("rust-libc" ,rust-libc) + ("rust-log" ,rust-log) + ("rust-miow" ,rust-miow) + ("rust-regex" ,rust-regex) + ("rust-rustfix" ,rust-rustfix) + ("rust-serde" ,rust-serde) + ("rust-serde-derive" ,rust-serde-derive) + ("rust-serde-json" ,rust-serde-json) + ("rust-winapi" ,rust-winapi) + ("rust-tempfile" ,rust-tempfile) + ("rust-tester" ,rust-tester)))) + (home-page "https://github.com/laumann/compiletest-rs") + (synopsis "Compiletest utility from the Rust compiler") + (description + "This project is an attempt at extracting the @code{compiletest} utility +from the Rust compiler. The @code{compiletest} utility is useful for library +and plugin developers, who want to include test programs that should fail to +compile, issue warnings or otherwise produce compile-time output.") + (license (list license:asl2.0 + license:expat)))) + (define-public rust-console (package (name "rust-console") @@ -1225,6 +1350,26 @@ "This package provides a terminal and console abstraction for Rust") (license license:expat))) +(define-public rust-constant-time-eq + (package + (name "rust-constant-time-eq") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (crate-uri "constant_time_eq" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "083icpr9xb72rrdxw3p4068dcspn6ai22jy7rhl2a8grfz448nlr")))) + (build-system cargo-build-system) + (home-page "https://github.com/cesarb/constant_time_eq") + (synopsis" Compares two equal-sized byte strings in constant time") + (description + "This package compares two equal-sized byte strings in constant time. +It is inspired by the Linux kernel's crypto_memneq.") + (license license:cc0))) + (define-public rust-conv (package (name "rust-conv") @@ -2036,6 +2181,36 @@ (license (list license:unlicense license:expat)))) +(define-public rust-duct + (package + (name "rust-duct") + (version "0.12.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "duct" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1vm1nzyi434h2zwix7c925qfa886ri1qx4nkq4hdrgkq7h9ayh1n")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-lazycell" ,rust-lazycell) + ("rust-libc" ,rust-libc) + ("rust-os-pipe" ,rust-os-pipe) + ("rust-shared-child" ,rust-shared-child)) + #:cargo-development-inputs + (("rust-tempdir" ,rust-tempdir)))) + (home-page + "https://github.com/oconnor663/duct.rs") + (synopsis + "a library for creating shell pipelines") + (description + "a library for creating shell pipelines") + (license license:expat))) + (define-public rust-either (package (name "rust-either") @@ -2557,6 +2732,42 @@ (license (list license:asl2.0 license:expat)))) +(define-public rust-rustfix + (package + (name "rust-rustfix") + (version "0.4.6") + (source + (origin + (method url-fetch) + (uri (crate-uri "rustfix" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "01zn0ysnass3mmrhxk90584y713vjfq1x97mi4saac99g9vsql3i")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-failure" ,rust-failure) + ("rust-log" ,rust-log) + ("rust-serde" ,rust-serde) + ("rust-serde-json" ,rust-serde-json)) + #:cargo-development-inputs + (("rust-difference" ,rust-difference) + ("rust-duct" ,rust-duct) + ("rust-env-logger" ,rust-env-logger) + ("rust-log" ,rust-log) + ("rust-proptest" ,rust-proptest) + ("rust-tempdir" ,rust-tempdir)))) + (home-page + "https://github.com/rust-lang-nursery/rustfix") + (synopsis + "Automatically apply the suggestions made by rustc") + (description + "Automatically apply the suggestions made by rustc") + (license (list license:asl2.0 + license:expat)))) + (define-public rust-flame (package (name "rust-flame") @@ -3093,6 +3304,35 @@ (license (list license:asl2.0 license:expat)))) +(define-public rust-gcc + (package + (name "rust-gcc") + (version "0.3.55") + (source + (origin + (method url-fetch) + (uri (crate-uri "gcc" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1hng1sajn4r67hndvhjysswz8niayjwvcj42zphpxzhbz89kjpwg")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-rayon" ,rust-rayon-0.8)) + #:cargo-development-inputs + (("rust-tempdir" ,rust-tempdir)) + ;#:tests? #f + )) ; tests fail + (home-page "https://github.com/alexcrichton/gcc-rs") + (synopsis "Library to compile C/C++ code into a Rust library/application") + (description + "This package provides a build-time dependency for Cargo build scripts to +assist in invoking the native C compiler to compile native C code into a static +archive to be linked into Rustcode.") + (license (list license:asl2.0 + license:expat)))) + (define-public rust-generic-array (package (name "rust-generic-array") @@ -4696,6 +4936,25 @@ (license (list license:asl2.0 license:expat)))) +(define-public rust-linked-hash-map-0.3 + (package + (inherit rust-linked-hash-map) + (name "rust-linked-hash-map") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "linked-hash-map" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1kaf95grvfqchxn8pl0854g8ab0fzl56217hndhhhz5qqm2j09kd")))) + (arguments + `(#:cargo-inputs + (("rust-clippy" ,rust-clippy) + ("rust-serde" ,rust-serde-0.8) + ("rust-serde-test" ,rust-serde-test)))))) ; 0.8 + (define-public rust-lipsum (package (name "rust-lipsum") @@ -7281,6 +7540,29 @@ invocations.") ("rust-serde" ,rust-serde) ("rust-serde-derive" ,rust-serde-derive)))))) +(define-public rust-rayon-0.8 + (package + (inherit rust-rayon) + (name "rust-rayon") + (version "0.8.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "rayon" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1j2l9x98ma63qkh9w8zik0vcpwqf9cvc2ynh66ibjp36nq4gw55n")))) + (arguments + `(#:cargo-inputs + (("rust-rayon-core" ,rust-rayon-core)) + #:cargo-development-inputs + (("rust-compiletest-rs" ,rust-compiletest-rs) + ("rust-docopt" ,rust-docopt) + ("rust-futures" ,rust-futures) + ("rust-rand" ,rust-rand-0.3) + ("rust-rustc-serialize" ,rust-rustc-serialize)))))) + (define-public rust-rayon-core (package (name "rust-rayon-core") @@ -7356,6 +7638,8 @@ invocations.") `(#:cargo-inputs (("rust-rand-core" ,rust-rand-core-0.3)))))) +;; This package requires features which are unavailable +;; on the stable releases of Rust. (define-public rust-redox-syscall ; guix upstreamable (package (name "rust-redox-syscall") @@ -7373,6 +7657,7 @@ invocations.") (synopsis "Rust library to access raw Redox system calls") (description "This package provides a Rust library to access raw Redox system calls.") + (properties '((hidden? . #t))) (license license:expat))) (define-public rust-redox-users @@ -7401,7 +7686,7 @@ system calls.") "A Rust library to access Redox users and groups functionality") (description "This package provides a Rust library to access Redox users and groups functionality") - (license #f))) + (license license:expat))) (define-public rust-ref-cast (package @@ -7837,6 +8122,34 @@ system calls.") (license (list license:asl2.0 license:boost1.0)))) +(define-public rust-scoped-threadpool + (package + (name "rust-scoped-threadpool") + (version "0.1.9") + (source + (origin + (method url-fetch) + (uri (crate-uri "scoped_threadpool" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1a26d3lk40s9mrf4imhbik7caahmw2jryhhb6vqv6fplbbgzal8x")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-development-inputs + (("rust-lazy-static" ,rust-lazy-static)))) + (home-page "https://github.com/Kimundi/scoped-threadpool-rs") + (synopsis "library for scoped and cached threadpools") + (description + "This crate provides a stable, safe and scoped threadpool. It can be used +to execute a number of short-lived jobs in parallel without the need to respawn +the underlying threads. Jobs are runnable by borrowing the pool for a given +scope, during which an arbitrary number of them can be executed. These jobs can +access data of any lifetime outside of the pools scope, which allows working on +non-'static references in parallel.") + (license (list license:asl2.0 + license:expat)))) + (define-public rust-scroll (package (name "rust-scroll") @@ -9147,7 +9460,7 @@ function with proven statistical guarantees.") (define-public rust-term-size (package (name "rust-term-size") - (version "1.0.0-beta1") + (version "0.3.1") (source (origin (method url-fetch) @@ -9156,12 +9469,12 @@ function with proven statistical guarantees.") (string-append name "-" version ".tar.gz")) (sha256 (base32 - "13w9cqjhzh3mmx6zami8lxyf42xx53yy866zxhxqcm71k637v8d8")))) + "09wk3173ngmb710qs9rwgibq4w250q8lgnwjvb9cypc1vdk9lnwy")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-clippy" ,rust-clippy) - ;("rust-kernel32-sys" ,rust-kernel32-sys) ; windows + ("rust-kernel32-sys" ,rust-kernel32-sys) ("rust-libc" ,rust-libc) ("rust-winapi" ,rust-winapi)))) (home-page @@ -11111,3 +11424,21 @@ in-memory encoding/decoding.") "The missing YAML 1.2 parser for rust") (license (list license:asl2.0 license:expat)))) + +(define-public rust-yaml-rust-0.3 + (package + (inherit rust-yaml-rust) + (name "rust-yaml-rust") + (version "0.3.5") + (source + (origin + (method url-fetch) + (uri (crate-uri "yaml-rust" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "14m9dzwb8fb05f4jjb4nqp49rxd9c5vcmwpv3a04d2y5iphncqz6")))) + (arguments + `(#:cargo-inputs + (("rust-clippy" ,rust-clippy) + ("rust-linked-hash-map" ,rust-linked-hash-map-0.3)))))) |