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authorpjotrp2016-02-28 17:42:06 +0000
committerpjotrp2016-02-28 17:42:06 +0000
commitf82b7c5b7ef5bdb9761e48761f683d62d3a05c48 (patch)
tree7c4f84ab1fb00e60f5f4123f514304139b342409 /gn/packages
parentb280af1638843cc3b3ca14933a07b66076b0713d (diff)
downloadguix-bioinformatics-f82b7c5b7ef5bdb9761e48761f683d62d3a05c48.tar.gz
r-wgcna deps
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/bioinformatics.scm24
-rw-r--r--gn/packages/genenetwork.scm1
2 files changed, 24 insertions, 1 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 92be2b4..b503e22 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -48,6 +48,28 @@
#:use-module (gn packages statistics)
#:use-module (srfi srfi-1))
+
+(define-public r-biocpreprocesscore
+ (package
+ (name "r-biocpreprocesscore")
+ (version "1.32.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "preprocessCore" version))
+ (sha256
+ (base32
+ "07isghjkqm91rg37l1fzpjrbq36b7w4pbsi95wwh6a8qq7r69z1n"))))
+ (properties
+ `((upstream-name . "BiocpreprocessCore")
+ (r-repository . bioconductor)))
+ (build-system r-build-system)
+ (home-page "http://bioconductor.org/packages/preprocessCore")
+ (synopsis "Preprocess functions for Bioconductor")
+ (description
+ "A library of core preprocessing routines.")
+ (license license:lgpl2.0+)))
+
+
(define-public r-wgcna
(let ((commit "425bc170cc0873ddbd414675ac40f6d4d724c7cb"))
(package
@@ -78,7 +100,7 @@
("r-impute" ,r-impute)
("r-matrixstats" ,r-matrixstats)
; ("r-parallel" ,r-parallel)
- ; ("r-preprocesscore" ,r-preprocesscore)
+ ("r-biocpreprocesscore" ,r-biocpreprocesscore)
; ("r-splines" ,r-splines)
; ("r-stats" ,r-stats)
; ("r-survival" ,r-survival)
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index b77ccb4..033bf94 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -158,6 +158,7 @@
(propagated-inputs `( ;; propagated for development purposes
("python" ,python-2) ;; probably superfluous
("r" ,r)
+ ("r-wgcna" ,r-wgcna)
("redis" ,redis)
("mysql" ,mysql)
("gemma" ,gemma-git)