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authorRoel Janssen2016-03-20 22:53:56 +0100
committerRoel Janssen2016-03-20 22:53:56 +0100
commita8604b2b3ba3627e77c8f7189f664a368c750b5e (patch)
treed574022e6fa0eaadc2a75eaf975587f73eed1a7c /gn/packages
parentc22eeccf8b821c404b1a34c5caf685ed5f724372 (diff)
downloadguix-bioinformatics-a8604b2b3ba3627e77c8f7189f664a368c750b5e.tar.gz
Add mongodb.
This package was rejected upstream because it contains the sources of libraries that are also available as shared libraries.
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/mongodb.scm74
1 files changed, 74 insertions, 0 deletions
diff --git a/gn/packages/mongodb.scm b/gn/packages/mongodb.scm
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+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gn packages bioinformatics)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix utils)
+ #:use-module (guix download)
+ #:use-module (guix build-system gnu)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages perl)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages python))
+
+(define-public mongodb
+ (package
+ (name "mongodb")
+ (version "3.3.3")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/mongodb/mongo/archive/r"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32 "01v16j8xbry7m7apwlhiqhgx3zyyk2kadyk2sr9m6k20wnh5j24y"))
+ (patches (list (search-patch "mongodb-add-version-file.patch")))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("scons" ,scons)
+ ("python" ,python-2)
+ ("perl" ,perl)))
+ (arguments
+ `(#:tests? #f ; There is no 'check' target.
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure) ; There is no configure phase
+ (add-after 'unpack 'scons-propagate-environment
+ (lambda _
+ ;; Modify the SConstruct file to arrange for
+ ;; environment variables to be propagated.
+ (substitute* "SConstruct"
+ (("^env = Environment\\(")
+ "env = Environment(ENV=os.environ, "))))
+ (replace 'build
+ (lambda _
+ (zero? (system* "scons" "mongod" "mongo" "mongos"))))
+ (replace 'install
+ (lambda _
+ (let ((bin (string-append (assoc-ref %outputs "out") "/bin")))
+ (install-file "mongod" bin)
+ (install-file "mongos" bin)
+ (install-file "mongo" bin)))))))
+ (home-page "https://www.mongodb.org/")
+ (synopsis "High performance and high availability document database")
+ (description "Mongo is a high-performance, high availability,
+schema-free document-oriented database. A key goal of MongoDB is to bridge
+the gap between key/value stores (which are fast and highly scalable) and
+traditional RDBMS systems (which are deep in functionality).")
+ (license (list agpl3 asl2.0))))