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authorpjotrp2016-02-28 11:18:38 +0000
committerpjotrp2016-02-28 11:18:38 +0000
commit42d110f144f36f6b1bf2092254ca3286094bb206 (patch)
treefe1312b7cf0afef06146c143c4130dcccb9ac2e2 /gn/packages
parent182c7797cc905faa1a2d497397ef465bbf484ca2 (diff)
downloadguix-bioinformatics-42d110f144f36f6b1bf2092254ca3286094bb206.tar.gz
r-wgca: git fetch
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/bioinformatics.scm25
1 files changed, 14 insertions, 11 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 405e5b3..2bdf47a 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -49,25 +49,28 @@
#:use-module (srfi srfi-1))
(define-public r-wgcna
+ (let ((commit "9c68667c3"))
(package
(name "r-wgcna")
- (version "1.48")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "WGCNA" version))
- (sha256
- (base32
- "18yl2v3s279saq318vd5hlwnqfm89rxmjjji778d2d26vviaf6bn"))))
+ (version (string-append "1.49-" commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/genenetwork/WGCNA.git")
+ (commit commit)))
+ (file-name (string-append name "-" commit))
+ (sha256
+ (base32
+ "0cv824wkdml9h9imsc30s2x3l8g65j44cpjbr1ydkk49g5qmf581"))))
(properties `((upstream-name . "WGCNA")))
(build-system r-build-system)
(propagated-inputs
`( ;; ("r-annotationdbi" ,r-annotationdbi)
- ("r-biocparallel" ,r-biocparallel)
+ ; ("r-biocparallel" ,r-biocparallel)
; ("r-dynamictreecut" ,r-dynamictreecut)
; ("r-fastcluster" ,r-fastcluster)
; ("r-foreach" ,r-foreach)
- ("r-go-db" ,r-go-db)
+ ; ("r-go-db" ,r-go-db)
; ("r-grdevices" ,r-grdevices)
; ("r-hmisc" ,r-hmisc)
("r-impute" ,r-impute)
@@ -85,7 +88,7 @@
"Weighted Correlation Network Analysis")
(description
"Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.")
- (license license:gpl2+)))
+ (license license:gpl2+))))
(define-public qtlreaper
(package