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authorpjotrp2020-09-27 11:40:48 +0100
committerpjotrp2020-09-27 11:40:48 +0100
commit9e1e668e4f9f9e2b595620fda831da0525db4095 (patch)
tree1d0f6572f4b2c37fea030f77c2607d6301d62059 /gn/packages
parentc8a5ec975fce472ce6f9e191eae2f660c6ab4226 (diff)
downloadguix-bioinformatics-9e1e668e4f9f9e2b595620fda831da0525db4095.tar.gz
Added python testing framework packages
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/python.scm95
1 files changed, 95 insertions, 0 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index 2257194..19b81f8 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -1647,3 +1647,98 @@ sorted order.")
(description
"Read PLINK files into Pandas data frames")
(license license:expat)))
+
+(define-public python-pytest-regressions
+ (package
+ (name "python-pytest-regressions")
+ (version "2.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pytest-regressions" version))
+ (sha256
+ (base32
+ "0227957vmy93pdaayakwwc2zawndbh203d2yc9nbss36i3s8xs3f"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-pytest" ,python-pytest)
+ ("python-pytest-datadir" ,python-pytest-datadir)
+ ("python-pyyaml" ,python-pyyaml)))
+ (native-inputs
+ `(("python-matplotlib" ,python-matplotlib)
+ ("python-numpy" ,python-numpy)
+ ("python-pandas" ,python-pandas)
+ ("python-pillow" ,python-pillow)
+ ("python-pre-commit" ,python-pre-commit)
+ ("python-restructuredtext-lint"
+ ,python-restructuredtext-lint)
+ ("python-tox" ,python-tox)))
+ (inputs
+ `(("python-setuptools-scm" ,python-setuptools-scm)))
+ (home-page
+ "https://github.com/ESSS/pytest-regressions")
+ (synopsis
+ "Easy to use fixtures to write regression tests.")
+ (description
+ "Easy to use fixtures to write regression tests.")
+ (license license:expat)))
+
+(define-public python-pytest-datadir
+ (package
+ (name "python-pytest-datadir")
+ (version "1.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pytest-datadir" version))
+ (sha256
+ (base32
+ "066bg6wlzgq2pqnjp73dfrcmk8951xw3aqcxa3p1axgqimrixbyk"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-pathlib2" ,python-pathlib2)
+ ("python-pytest" ,python-pytest)))
+ (inputs
+ `(("python-setuptools-scm" ,python-setuptools-scm)))
+ (home-page
+ "http://github.com/gabrielcnr/pytest-datadir")
+ (synopsis
+ "pytest plugin for test data directories and files")
+ (description
+ "pytest plugin for test data directories and files")
+ (license license:expat)))
+
+(define-public python-pre-commit
+ (package
+ (name "python-pre-commit")
+ (version "2.7.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ "https://files.pythonhosted.org/packages/bd/b4/e5d78c83533dd116596d05bdc8a82372b44ce7e7bef0ba7f0c6b33307613/pre_commit-2.7.1.tar.gz")
+ (sha256
+ (base32
+ "0w2a104yhbw1z92rcwpq0gdjsxvr2bwx5ry5xhlf2psnfkjx6ky5"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-cfgv" ,python-cfgv)
+ ("python-identify" ,python-identify)
+ ("python-importlib-metadata"
+ ,python-importlib-metadata)
+ ("python-importlib-resources"
+ ,python-importlib-resources)
+ ("python-nodeenv" ,python-nodeenv)
+ ("python-pyyaml" ,python-pyyaml)
+ ("python-toml" ,python-toml)
+ ("python-virtualenv" ,python-virtualenv)))
+ (arguments
+ `(#:tests? #f ; suprise test failures
+ ))
+ (home-page
+ "https://github.com/pre-commit/pre-commit")
+ (synopsis
+ "A framework for managing and maintaining multi-language pre-commit hooks.")
+ (description
+ "A framework for managing and maintaining multi-language pre-commit hooks.")
+ (license license:expat)))