YAJ package start

1 files changed, 91 insertions, 0 deletions

diff --git a/gn/packages/yaj.scm b/gn/packages/yaj.scm
new file mode 100644
index 0000000..90959c7
--- /dev/null
+++ b/gn/packages/yaj.scm
@@ -0,0 +1,91 @@
+(define-module (gn packages yaj)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix packages)
+  #:use-module (guix utils)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system cmake)
+  #:use-module (guix build-system perl)
+  #:use-module (guix build-system python)
+  ;; #:use-module (guix build-system ruby)
+  #:use-module (guix build-system r)
+  #:use-module (guix build-system trivial)
+  #:use-module (gnu packages)
+  #:use-module (gnu packages algebra)
+  #:use-module (gnu packages base)
+  #:use-module (gnu packages bioinformatics)
+  #:use-module (gnu packages boost)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages databases)
+  #:use-module (gnu packages cpio)
+  #:use-module (gnu packages file)
+  #:use-module (gnu packages gcc)
+  #:use-module (gnu packages graphviz)
+  #:use-module (gnu packages java)
+  #:use-module (gnu packages linux)
+  #:use-module (gnu packages ldc)
+  #:use-module (gnu packages machine-learning)
+  #:use-module (gnu packages maths)
+  #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages perl)
+  #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages popt)
+  #:use-module (gnu packages protobuf)
+  #:use-module (gnu packages python)
+  #:use-module (gnu packages statistics)
+  #:use-module (gnu packages tbb)
+  #:use-module (gnu packages textutils)
+  #:use-module (gnu packages vim)
+  #:use-module (gnu packages web)
+  #:use-module (gnu packages xml)
+  #:use-module (gnu packages bootstrap)
+  #:use-module (gnu packages version-control)
+  #:use-module (gn packages bioinformatics)
+  #:use-module (gn packages gemma)
+  #:use-module (gn packages javascript)
+  #:use-module (gn packages phewas)
+  #:use-module (gn packages python)
+  #:use-module (gn packages statistics)
+  #:use-module (srfi srfi-1))
+
+
+(define-public yaj
+  (let ((md5 "93e745e9c"))
+    (package
+    (name "yaj")
+    (version "0.0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri "http://files.genenetwork.org/raw_database/md5sum.txt") ; any old file
+       (file-name (string-append name "-" md5))
+       (sha256
+        (base32 "1cnkiwid4h0nnf93rm647ji9vhfzjl23arp1xj374la7mmic9jqs"))))
+    (build-system trivial-build-system)
+    (native-inputs `(("unzip" ,unzip)
+                     ("source" ,source)))
+    (inputs `(("python" ,python)))
+    ;           ("python2-flask" ,python2-flask)
+    ;           ("python2-jinja2" ,python2-jinja2)
+    ;           ("python2-mak" ,python2-mak)
+    ;           ))
+
+    ; (arguments
+    ;  `(#:modules ((guix build utils))
+    ;    #:python ,python-2
+    ;    #:builder #f))
+    (arguments
+     `(#:modules ((guix build utils))
+       #:builder (begin
+                   (use-modules (guix build utils))
+                   (let ((source (assoc-ref %build-inputs "source"))
+                         (unzip (string-append (assoc-ref %build-inputs "unzip") "/bin/unzip"))
+                         )
+                   (and (mkdir "db")
+                        (zero? (system* unzip source "-d" "db"))
+                        (chdir "db"))))))
+    (home-page "http://github.com/pjotrp/yaj/")
+    (synopsis "Yet another journal")
+    (description "YAJ.")
+    (license license:agpl3+))))