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| author | pjotrp | 2016-02-20 14:18:45 +0000 |
|---|---|---|
| committer | pjotrp | 2016-02-20 14:18:45 +0000 |
| commit | dfb685956526dce67a8e03849bffd1d9d52c5958 (patch) | |
| tree | dfc6b2c8cb1e035a01f441ef1cfc6e9ee7c7c8e1 /gn/packages/statistics.scm | |
| parent | dd74ba8cd335ac94dca916549a2b9edbc0332748 (diff) | |
| download | guix-bioinformatics-dfb685956526dce67a8e03849bffd1d9d52c5958.tar.gz | |
pylmm: Patch wrapper script so it points to the correct locations.
Diffstat (limited to 'gn/packages/statistics.scm')
| -rw-r--r-- | gn/packages/statistics.scm | 22 |
1 files changed, 19 insertions, 3 deletions
diff --git a/gn/packages/statistics.scm b/gn/packages/statistics.scm index c10ba29..2d83816 100644 --- a/gn/packages/statistics.scm +++ b/gn/packages/statistics.scm @@ -150,7 +150,7 @@ (license license:asl2.0))) (define-public pylmm-gn2 - (let ((commit "f5c9e2378")) + (let ((commit "3c6d1cac8")) (package (name "pylmm-gn2") (version (string-append "1.0-" commit )) @@ -162,11 +162,27 @@ (file-name (string-append name "-" commit)) (sha256 (base32 - "10qb5dpwqjdiq9gakl7m4p4ckjlc701mzqpgbhp89w1aysddj1c7")))) + "0wryaadb36i275p9d2i1kzflahvbl9kj5wlk8jlbvjij8gpqg964")))) (build-system python-build-system) + (inputs `( + ("python2-setuptools" ,python2-setuptools) + ("python2-scipy" ,python2-scipy) + ("python2-numpy" ,python2-numpy) + )) (arguments `(#:python ,python-2 - #:tests? #f)) ; no 'setup.py test' + #:tests? #f ; no 'setup.py test' + #:phases + (modify-phases %standard-phases + (add-before + 'build 'change-paths + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (substitute* "scripts/pylmm_redis" + (("/usr/bin/python") (which "python")) + (("\\$PACKAGEDIR") (string-append out "/lib/python2.7/site-packages"))) + )))))) + (home-page "http://genenetwork.org/") (synopsis "LMM resolver") (description "Fast and lightweight linear mixed-model (LMM) solver |