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authorRoel Janssen2016-04-04 17:32:34 +0200
committerRoel Janssen2016-04-04 17:32:34 +0200
commit3002054c737b6328fc71ab7663986e1dd861f314 (patch)
tree82c06ce789f61307e787ec482888bcc7b0fa408a /gn/packages/sparql-query.scm
parente9140218a59e71770ff408320f0f0adf04925c87 (diff)
downloadguix-bioinformatics-3002054c737b6328fc71ab7663986e1dd861f314.tar.gz
gn: Add sparql-query.
* gn/packages/sparql-query.scm: New file.
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diff --git a/gn/packages/sparql-query.scm b/gn/packages/sparql-query.scm
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+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gn packages sparql-query)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix utils)
+ #:use-module (guix download)
+ #:use-module (guix build-system gnu)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages curl)
+ #:use-module (gnu packages glib)
+ #:use-module (gnu packages readline)
+ #:use-module (gnu packages ncurses)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages xml))
+
+(define-public sparql-query
+ (package
+ (name "sparql-query")
+ (version "1.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/tialaramex/sparql-query/archive/"
+ version ".tar.gz"))
+ (sha256
+ (base32 "0yq3k20472rv8npcc420q9ab6idy584g5y0q501d360k5q0ggr8w"))
+ (file-name (string-append name "-" version ".tar.gz"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("readline" ,readline)
+ ("ncurses" ,ncurses)
+ ("glib" ,glib)
+ ("libxml2" ,libxml2)
+ ("curl" ,curl)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (arguments
+ `(#:tests? #t
+ #:make-flags '("CC=gcc")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-after 'unpack 'remove-git-dependency
+ (lambda _
+ (substitute* "Makefile"
+ (("^gitrev :=.*$") "gitrev = \"v1.0-3-gb015131\""))))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
+ (install-file "sparql-query" bin)
+ (system* "ln" "--symbolic"
+ (string-append bin "/sparql-query")
+ (string-append bin "/sparql-update")))))
+ (replace 'check
+ (lambda _
+ (and
+ ;; The make-flags seem to get ignored here.
+ (zero? (system* "make" "CC=gcc" "scan-test"))
+ (zero? (system* "./scan-test"))))))))
+ (home-page "https://github.com/tialaramex/sparql-query/")
+ (synopsis "Command-line tool for accessing SPARQL endpoints over HTTP")
+ (description "sparql-query is a command-line tool for accessing SPARQL
+endpoints over HTTP. It has been intentionally designed to 'feel' similar to
+tools for interrogating SQL databases. For example, you can enter a query over
+several lines, using a semi-colon at the end of a line to indicate the end of
+your query. It also supports readline so that you can more easily recall and
+edit previous queries, even across sessions. It can be used non-interactively,
+for example from a shell script.")
+ (license license:gpl2+)))