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authorPjotr Prins2019-09-05 00:27:07 -0500
committerPjotr Prins2019-09-05 00:27:07 -0500
commit90585724d8fb4a7d2ef4ec926351e0d108e1982f (patch)
treee837da587728460aaef4d067231dff838ccc4412 /gn/packages/sparql-query.scm
parenta5a1e75c1379d9c26c0a0f9dbb9fb069c7bf7f18 (diff)
parentbf30a28e423fc156e8cbd8553e306ae99f46618a (diff)
downloadguix-bioinformatics-90585724d8fb4a7d2ef4ec926351e0d108e1982f.tar.gz
Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformatics
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diff --git a/gn/packages/sparql-query.scm b/gn/packages/sparql-query.scm
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@@ -1,87 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gn packages sparql-query)
- #:use-module ((guix licenses) #:prefix license:)
- #:use-module (guix packages)
- #:use-module (guix utils)
- #:use-module (guix download)
- #:use-module (guix build-system gnu)
- #:use-module (gnu packages)
- #:use-module (gnu packages compression)
- #:use-module (gnu packages curl)
- #:use-module (gnu packages glib)
- #:use-module (gnu packages readline)
- #:use-module (gnu packages ncurses)
- #:use-module (gnu packages pkg-config)
- #:use-module (gnu packages xml))
-
-(define-public sparql-query
- (package
- (name "sparql-query")
- (version "1.1")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/tialaramex/sparql-query/archive/"
- version ".tar.gz"))
- (sha256
- (base32 "0yq3k20472rv8npcc420q9ab6idy584g5y0q501d360k5q0ggr8w"))
- (file-name (string-append name "-" version ".tar.gz"))))
- (build-system gnu-build-system)
- (inputs
- `(("readline" ,readline)
- ("ncurses" ,ncurses)
- ("glib" ,glib)
- ("libxml2" ,libxml2)
- ("curl" ,curl)))
- (native-inputs
- `(("pkg-config" ,pkg-config)))
- (arguments
- `(#:tests? #t
- #:make-flags '("CC=gcc")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (add-after 'unpack 'remove-git-dependency
- (lambda _
- (substitute* "Makefile"
- (("^gitrev :=.*$") "gitrev = \"v1.0-3-gb015131\""))))
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (bin (string-append out "/bin")))
- (install-file "sparql-query" bin)
- (system* "ln" "--symbolic"
- (string-append bin "/sparql-query")
- (string-append bin "/sparql-update")))))
- (replace 'check
- (lambda _
- (and
- ;; The make-flags seem to get ignored here.
- (zero? (system* "make" "CC=gcc" "scan-test"))
- (zero? (system* "./scan-test"))))))))
- (home-page "https://github.com/tialaramex/sparql-query/")
- (synopsis "Command-line tool for accessing SPARQL endpoints over HTTP")
- (description "sparql-query is a command-line tool for accessing SPARQL
-endpoints over HTTP. It has been intentionally designed to 'feel' similar to
-tools for interrogating SQL databases. For example, you can enter a query over
-several lines, using a semi-colon at the end of a line to indicate the end of
-your query. It also supports readline so that you can more easily recall and
-edit previous queries, even across sessions. It can be used non-interactively,
-for example from a shell script.")
- (license license:gpl2+)))