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| author | pjotrp | 2017-02-25 08:09:19 +0000 |
|---|---|---|
| committer | pjotrp | 2017-02-25 08:09:19 +0000 |
| commit | 303c93c04c65a2dbf0c8ad8e27b5e6c849848d06 (patch) | |
| tree | ad2df7f2d585acc8718e5c3afddfd5b2e3fadd1d /gn/packages/sambamba.scm | |
| parent | 2bef484b005f1fd18173ecde3da34bf9e67587f2 (diff) | |
| download | guix-bioinformatics-303c93c04c65a2dbf0c8ad8e27b5e6c849848d06.tar.gz | |
sambamba: patch main bin
Diffstat (limited to 'gn/packages/sambamba.scm')
| -rw-r--r-- | gn/packages/sambamba.scm | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/gn/packages/sambamba.scm b/gn/packages/sambamba.scm index 221aeb6..6463689 100644 --- a/gn/packages/sambamba.scm +++ b/gn/packages/sambamba.scm @@ -87,7 +87,8 @@ (lambda* (#:key inputs #:allow-other-keys) (substitute* "sambamba/pileup.d" (("string samtoolsBin = null;") (string-append "string samtoolsBin = \"" (which "samtools") "\";")) - (("string bcftoolsBin = null;") (string-append "string bcftoolsBin = \"" (which "bcftools") "\";"))))) + (("string samtoolsBin = null;") (string-append "string samtoolsBin = \"" (which "samtools") "\";")) + ((" this_app = args[0];") (string-append " this_app = \"" (which "sambamba") "\";"))))) (add-after 'unpack 'unpack-htslib-sources (lambda* (#:key inputs #:allow-other-keys) ;; The current build compiles htslib statically into the |