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author | Efraim Flashner | 2020-04-27 04:57:49 -0500 |
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committer | Efraim Flashner | 2020-04-27 04:58:18 -0500 |
commit | 3b5182bdd5d9a24cbc15c47df6acbfdbc1c80d3a (patch) | |
tree | 59b1d0d798395d8e07dc3ae2caf0d9652edd7e16 /gn/packages/ratspub.scm | |
parent | 91f441b91dd00372263a3956f7682df56151f948 (diff) | |
download | guix-bioinformatics-3b5182bdd5d9a24cbc15c47df6acbfdbc1c80d3a.tar.gz |
gn: Add hrdp-project
Diffstat (limited to 'gn/packages/ratspub.scm')
-rw-r--r-- | gn/packages/ratspub.scm | 93 |
1 files changed, 93 insertions, 0 deletions
diff --git a/gn/packages/ratspub.scm b/gn/packages/ratspub.scm index 9dd9745..b664799 100644 --- a/gn/packages/ratspub.scm +++ b/gn/packages/ratspub.scm @@ -9,6 +9,7 @@ #:use-module (gnu packages bioinformatics) #:use-module (gn packages javascript) #:use-module (gnu packages machine-learning) + #:use-module (gnu packages python) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) @@ -155,3 +156,95 @@ question.") ((#:phases phases) `(modify-phases ,phases (delete 'check)))))))) + +(define-public hrdp-project + (package + (name "hrdp-project") + (version "0.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/noderboarder/hrdp-project") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1ag7jm43p35yh0cqcn53wg4iw7sgfypw10mxq5klxvhgj3r6cf7i")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; no test suite + #:phases + (modify-phases %standard-phases + (delete 'configure) + (delete 'build) + (add-after 'unpack 'patch-sources + (lambda _ + (substitute* "./app/templates/layout.html" + (("https://.*.bootstrapcdn.com/bootstrap/4.*/css/bootstrap.min.css.*") + "/static/bootstrap.min.css\">\n") + (("https://.*.bootstrapcdn.com/bootstrap/4.*/js/bootstrap.min.js.*") + "/static/bootstrap.min.js\"></script>\n") + (("https://code.jquery.com/jquery-3.*.slim.min.js.*") + "/static/jquery.slim.min.js\"></script>\n") + ;(("https://cdn.jsdelivr.net/npm/popper.js@1.16.0/dist/umd/popper.min.js.*") + ; "/static/popper.min.js\"></script>\n") + ) + #t)) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (python (assoc-ref inputs "python"))) + (delete-file "main.py") + (with-output-to-file "main.py" + (lambda () + (format #t "#!~a/bin/python +from app import create_app + +app = create_app() + +if __name__ == '__main__': + app.run(debug=True, port=4222)~%" + python))) + (chmod "main.py" #o555) + (copy-recursively "." out)) + #t)) + (add-after 'install 'install-javascript + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (bootstrap (assoc-ref inputs "bootstrap")) + (jquery (assoc-ref inputs "jquery")) + ;(js-popper (assoc-ref inputs "js-popper")) + ) + (symlink (string-append bootstrap + "/share/web/bootstrap/css/bootstrap.min.css") + (string-append out "/app/static/bootstrap.min.css")) + (symlink (string-append bootstrap + "/share/web/bootstrap/js/bootstrap.min.js") + (string-append out "/app/static/bootstrap.min.js")) + (symlink (string-append jquery + "/share/web/jquery/jquery.slim.min.js") + (string-append out "/app/static/jquery.slim.min.js")) + ;(symlink (string-append js-popper + ; "/share/web/popper/popper.min.js") + ; (string-append out "/static/popper.min.js")) + ) + #t)) + (add-after 'install 'wrap-executable + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (path (getenv "PYTHONPATH"))) + (wrap-program (string-append out "/main.py") + `("PYTHONPATH" ":" prefix (,path)))) + #t))))) + (inputs + `(("python" ,python) + ("python-flask-sqlalchemy" ,python-flask-sqlalchemy))) + (native-inputs + `(("bootstrap" ,web-bootstrap) + ("jquery" ,web-jquery) + ;("js-popper" ,js-popper) ; empty output + )) + (home-page "https://github.com/noderboarder/hrdp-project") + (synopsis "") + (description "") + (license license:expat))) |