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authorEfraim Flashner2020-04-27 04:57:49 -0500
committerEfraim Flashner2020-04-27 04:58:18 -0500
commit3b5182bdd5d9a24cbc15c47df6acbfdbc1c80d3a (patch)
tree59b1d0d798395d8e07dc3ae2caf0d9652edd7e16 /gn/packages/ratspub.scm
parent91f441b91dd00372263a3956f7682df56151f948 (diff)
downloadguix-bioinformatics-3b5182bdd5d9a24cbc15c47df6acbfdbc1c80d3a.tar.gz
gn: Add hrdp-project
Diffstat (limited to 'gn/packages/ratspub.scm')
-rw-r--r--gn/packages/ratspub.scm93
1 files changed, 93 insertions, 0 deletions
diff --git a/gn/packages/ratspub.scm b/gn/packages/ratspub.scm
index 9dd9745..b664799 100644
--- a/gn/packages/ratspub.scm
+++ b/gn/packages/ratspub.scm
@@ -9,6 +9,7 @@
#:use-module (gnu packages bioinformatics)
#:use-module (gn packages javascript)
#:use-module (gnu packages machine-learning)
+ #:use-module (gnu packages python)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
@@ -155,3 +156,95 @@ question.")
((#:phases phases)
`(modify-phases ,phases
(delete 'check))))))))
+
+(define-public hrdp-project
+ (package
+ (name "hrdp-project")
+ (version "0.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/noderboarder/hrdp-project")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1ag7jm43p35yh0cqcn53wg4iw7sgfypw10mxq5klxvhgj3r6cf7i"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f ; no test suite
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'build)
+ (add-after 'unpack 'patch-sources
+ (lambda _
+ (substitute* "./app/templates/layout.html"
+ (("https://.*.bootstrapcdn.com/bootstrap/4.*/css/bootstrap.min.css.*")
+ "/static/bootstrap.min.css\">\n")
+ (("https://.*.bootstrapcdn.com/bootstrap/4.*/js/bootstrap.min.js.*")
+ "/static/bootstrap.min.js\"></script>\n")
+ (("https://code.jquery.com/jquery-3.*.slim.min.js.*")
+ "/static/jquery.slim.min.js\"></script>\n")
+ ;(("https://cdn.jsdelivr.net/npm/popper.js@1.16.0/dist/umd/popper.min.js.*")
+ ; "/static/popper.min.js\"></script>\n")
+ )
+ #t))
+ (replace 'install
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (python (assoc-ref inputs "python")))
+ (delete-file "main.py")
+ (with-output-to-file "main.py"
+ (lambda ()
+ (format #t "#!~a/bin/python
+from app import create_app
+
+app = create_app()
+
+if __name__ == '__main__':
+ app.run(debug=True, port=4222)~%"
+ python)))
+ (chmod "main.py" #o555)
+ (copy-recursively "." out))
+ #t))
+ (add-after 'install 'install-javascript
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (bootstrap (assoc-ref inputs "bootstrap"))
+ (jquery (assoc-ref inputs "jquery"))
+ ;(js-popper (assoc-ref inputs "js-popper"))
+ )
+ (symlink (string-append bootstrap
+ "/share/web/bootstrap/css/bootstrap.min.css")
+ (string-append out "/app/static/bootstrap.min.css"))
+ (symlink (string-append bootstrap
+ "/share/web/bootstrap/js/bootstrap.min.js")
+ (string-append out "/app/static/bootstrap.min.js"))
+ (symlink (string-append jquery
+ "/share/web/jquery/jquery.slim.min.js")
+ (string-append out "/app/static/jquery.slim.min.js"))
+ ;(symlink (string-append js-popper
+ ; "/share/web/popper/popper.min.js")
+ ; (string-append out "/static/popper.min.js"))
+ )
+ #t))
+ (add-after 'install 'wrap-executable
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (path (getenv "PYTHONPATH")))
+ (wrap-program (string-append out "/main.py")
+ `("PYTHONPATH" ":" prefix (,path))))
+ #t)))))
+ (inputs
+ `(("python" ,python)
+ ("python-flask-sqlalchemy" ,python-flask-sqlalchemy)))
+ (native-inputs
+ `(("bootstrap" ,web-bootstrap)
+ ("jquery" ,web-jquery)
+ ;("js-popper" ,js-popper) ; empty output
+ ))
+ (home-page "https://github.com/noderboarder/hrdp-project")
+ (synopsis "")
+ (description "")
+ (license license:expat)))