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| author | Shepherd on Tux02 | 2024-06-20 07:26:21 -0500 |
|---|---|---|
| committer | Shepherd on Tux02 | 2024-06-20 07:26:21 -0500 |
| commit | f0f8dc84eca7088177797f84db05314537615c77 (patch) | |
| tree | 5a7408a19c92b0c4d536916269425d883c4f06ca /gn/packages/ratspub.scm | |
| parent | 951e77b10c84889f29c1f2322087c796cedb375a (diff) | |
| parent | 48af9393cf186230e08b0fa6f7f443bc818408d2 (diff) | |
| download | guix-bioinformatics-f0f8dc84eca7088177797f84db05314537615c77.tar.gz | |
Merge branch 'master' of https://gitlab.com/genenetwork/guix-bioinformatics
Diffstat (limited to 'gn/packages/ratspub.scm')
| -rw-r--r-- | gn/packages/ratspub.scm | 16 |
1 files changed, 12 insertions, 4 deletions
diff --git a/gn/packages/ratspub.scm b/gn/packages/ratspub.scm index 5f6f7b5..726bc0b 100644 --- a/gn/packages/ratspub.scm +++ b/gn/packages/ratspub.scm @@ -17,6 +17,7 @@ #:use-module (gnu packages python-xyz) #:use-module (gn packages javascript) #:use-module (gn packages machine-learning) + #:use-module (gn packages python) #:use-module (gn packages web)) (define-public ratspub @@ -148,6 +149,13 @@ Association Studies}} catalog are also included in the search. These gene-keyword relationships are presented as an interactive graph and a table.") (license license:expat))) +(define use-corrected-inputs + (package-input-rewriting/spec + ;; Tensorflow-native provides much improved speeds. python-h5py@2 provides + ;; compatibility with our version of tensorflow. + `(("tensorflow" . ,(const tensorflow-native)) + ("python-h5py" . ,(const python-h5py-2))))) + (define-public ratspub-with-tensorflow-native (package (inherit @@ -262,7 +270,7 @@ if __name__ == '__main__': (define-public genecup (package (name "genecup") - (version "1.6") + (version "1.8") (source (origin (method git-fetch) (uri (git-reference @@ -270,7 +278,7 @@ if __name__ == '__main__': (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "050yg4hvjs9rghw41q35xdd2c2rzh9sl4sfwkk3am150mgf2p0nh")))) + (base32 "0clnlnj6cl816yj3nalh1h6hsvnh3sjq2g84x1kmj1zkqkw184ri")))) (build-system python-build-system) (arguments `(#:tests? #f ; no test suite @@ -399,11 +407,11 @@ concepts and a list of keywords for each concept.") (define-public genecup-with-tensorflow-native (package (inherit - (tensowflow-native-instead-of-tensorflow genecup)) + (use-corrected-inputs genecup)) (name "genecup-with-tensorflow-native"))) (define-public genecup-latest-with-tensorflow-native (package (inherit - (tensowflow-native-instead-of-tensorflow genecup-master)) + (use-corrected-inputs genecup-master)) (name "genecup-latest-with-tensorflow-native"))) |