diff options
| author | jgart | 2022-04-06 11:46:55 -0400 |
|---|---|---|
| committer | jgart | 2022-04-06 11:54:52 -0400 |
| commit | b030b089f26f31ff06aa14788820a2b9a25e85b7 (patch) | |
| tree | e47634794967efac28d9db6b83f1aac20f106977 /gn/packages/quality-control.scm | |
| parent | fabe3c860d9df983b2cc4130fec72296b66408b3 (diff) | |
| download | guix-bioinformatics-b030b089f26f31ff06aa14788820a2b9a25e85b7.tar.gz | |
move sbcl-qc to quality-control module
Diffstat (limited to 'gn/packages/quality-control.scm')
| -rw-r--r-- | gn/packages/quality-control.scm | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/gn/packages/quality-control.scm b/gn/packages/quality-control.scm index 162b025..dd3c779 100644 --- a/gn/packages/quality-control.scm +++ b/gn/packages/quality-control.scm @@ -5,6 +5,9 @@ #:use-module (guix download) #:use-module (guix git-download) #:use-module (guix build-system gnu) + #:use-module (guix build-system asdf) + #:use-module (gnu packages lisp-check) + #:use-module (gnu packages lisp-xyz) #:use-module (gnu packages)) (define-public libcsv @@ -33,3 +36,46 @@ "CSV library written in pure ANSI C that can read and write CSV data.") (license license:lgpl2.1+)))) +(define-public sbcl-qc + (let ((commit "ed4254445b7dc247fa27d9189fd03841ad74f568") + (revision "3")) + (package + (name "sbcl-qc") + (version (git-version "20220331" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://git.genenetwork.org/jgart/qc") + (commit commit))) + (sha256 + (base32 "12i9s1ipqarvq6gsjqycfm8d3ym7dv7vn3nxb5c6214xrd4mmzjj")) + (file-name (git-file-name name commit)))) + (build-system asdf-build-system/sbcl) + (arguments + `(#:tests? #f ; Need to fix tests. + #:asd-files '("qc.asd"))) + (native-inputs + (list sbcl-1am)) + (inputs + (list sbcl-alexandria + sbcl-split-sequence)) + (home-page "https://git.genenetwork.org/jgart/qc/") + (synopsis "Quality control of delimited files") + (description +"@code{cl-qc} is a Common Lisp library for linting the following in +delimited text files: +@itemize +@item Whitespace +@item Floating-point number well-formedness +@item GeneChip Platform ID checks for Affymetrix, Illumina, and others +@end itemize\n") + (license license:llgpl)))) + +(define-public cl-qc + (sbcl-package->cl-source-package sbcl-qc)) + +(define-public ecl-qc + (sbcl-package->ecl-package sbcl-qc)) + + |