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author | Efraim Flashner | 2020-04-21 04:48:44 -0500 |
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committer | Efraim Flashner | 2020-04-21 04:48:44 -0500 |
commit | 6d3d3b3d166d823fab62187ffe454bb167ccd8a8 (patch) | |
tree | 010dbfa8bda047221c34593dab13fad32f3e09a5 /gn/packages/python.scm | |
parent | 40b410c5cd5368910416df411764342d549bd770 (diff) | |
download | guix-bioinformatics-6d3d3b3d166d823fab62187ffe454bb167ccd8a8.tar.gz |
rearrange and deduplicate some packages
Diffstat (limited to 'gn/packages/python.scm')
-rw-r--r-- | gn/packages/python.scm | 75 |
1 files changed, 75 insertions, 0 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm index c343815..46122ce 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -1134,3 +1134,78 @@ spreadsheets without the need for COM objects.") (sha256 (base32 "1lg1klrczvzfan89y3bl9ykrknl3nb01vvai37fkww24apzyibjf")))))) + +(define-public python-arvados-python-client + (package + (name "python-arvados-python-client") + (version "2.0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "arvados-python-client" version)) + (sha256 + (base32 + "19l4w6m5426x5k2kick630dh2jx26j16ycs2nhbfgr4cd43d29y4")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; tests not included? + (propagated-inputs + `(("python-ciso8601" ,python-ciso8601) + ("python-future" ,python-future) + ;("python-google-api-python-client" ,python-google-api-python-client) + ("python-google-api-client" ,python-google-api-client) + ("python-httplib2" ,python-httplib2) + ("python-pycurl" ,python-pycurl) + ("python-ruamel.yaml" ,python-ruamel.yaml-0.15) + ("python-setuptools" ,python-setuptools) + ("python-ws4py" ,python-ws4py))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-oauth2client" ,python-oauth2client) + ("python-pbr" ,python-pbr-1.6.0) + ("python-pyyaml" ,python-pyyaml) + ("python-uritemplate" ,python-uritemplate))) + (home-page "https://arvados.org") + (synopsis "Arvados client library") + (description "This package provides the arvados module, an API client for +Arvados. It also includes higher-level functions to help you write Crunch +scripts, and command-line tools to store and retrieve data in the Keep storage +server.") + (license license:asl2.0))) + +(define-public python-schema-salad + (package + (name "python-schema-salad") + (version "5.0.20200416112825") + (source + (origin + (method url-fetch) + (uri (pypi-uri "schema-salad" version)) + (sha256 + (base32 + "1pm6q266qrw4r0w0vnzhsvqgk5j8b3q61hxg99awhgpjsmcvkmsz")))) + (build-system python-build-system) + (propagated-inputs + `(("python-cachecontrol" ,python-cachecontrol-0.11) + ("python-lockfile" ,python-lockfile) + ("python-mistune" ,python-mistune) + ("python-rdflib" ,python-rdflib) + ("python-rdflib-jsonld" ,python-rdflib-jsonld) + ("python-requests" ,python-requests) + ("python-ruamel.yaml" ,python-ruamel.yaml) + ("python-setuptools" ,python-setuptools) + ("python-typing-extensions" ,python-typing-extensions))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/common-workflow-language/schema_salad") + (synopsis "Schema Annotations for Linked Avro Data (SALAD)") + (description + "Salad is a schema language for describing JSON or YAML structured linked +data documents. Salad schema describes rules for preprocessing, structural +validation, and hyperlink checking for documents described by a Salad schema. +Salad supports rich data modeling with inheritance, template specialization, +object identifiers, object references, documentation generation, code +generation, and transformation to RDF. Salad provides a bridge between document +and record oriented data modeling and the Semantic Web.") + (license license:asl2.0))) |